Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M8286_RS01705 Genome accession   NZ_CP097577
Coordinates   343735..344523 (+) Length   262 a.a.
NCBI ID   WP_023369388.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 338735..349523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS01685 (M8286_01690) - 339352..340311 (-) 960 WP_275601295.1 asparaginase -
  M8286_RS01690 (M8286_01695) - 340381..341746 (+) 1366 Protein_294 Cof-type HAD-IIB family hydrolase -
  M8286_RS01695 (M8286_01700) - 341762..342214 (-) 453 WP_004195772.1 universal stress protein -
  M8286_RS01700 (M8286_01705) - 342369..343583 (+) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -
  M8286_RS01705 (M8286_01710) codY 343735..344523 (+) 789 WP_023369388.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M8286_RS01710 (M8286_01715) - 344525..345052 (+) 528 WP_275601700.1 isochorismatase family cysteine hydrolase -
  M8286_RS01715 (M8286_01720) rplS 345468..345815 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  M8286_RS01720 (M8286_01725) - 346002..346676 (+) 675 WP_105202422.1 hydrolase -
  M8286_RS01725 (M8286_01730) gatC 346892..347194 (+) 303 WP_024408528.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  M8286_RS01730 (M8286_01735) gatA 347194..348660 (+) 1467 WP_275601296.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29334.37 Da        Isoelectric Point: 4.6190

>NTDB_id=595689 M8286_RS01705 WP_023369388.1 343735..344523(+) (codY) [Streptococcus suis strain 3112]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=595689 M8286_RS01705 WP_023369388.1 343735..344523(+) (codY) [Streptococcus suis strain 3112]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGATTGCAACTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATACCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTCCAAAATAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
ATCGACTTACCCAAATGGTCTGACAACGATAGCGCCTATCCATGTGACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.846

93.893

0.496