Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   M8286_RS01115 Genome accession   NZ_CP097577
Coordinates   208562..211054 (-) Length   830 a.a.
NCBI ID   WP_358637939.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 203562..216054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS01090 (M8286_01100) dinB 204193..205260 (+) 1068 WP_014637367.1 DNA polymerase IV -
  M8286_RS01095 (M8286_01105) - 205303..205722 (+) 420 WP_044767603.1 Rrf2 family transcriptional regulator -
  M8286_RS01100 (M8286_01110) - 205961..206587 (+) 627 WP_275601222.1 NAD(P)-dependent oxidoreductase -
  M8286_RS01105 (M8286_01115) - 206690..207610 (+) 921 WP_275601223.1 PfkB family carbohydrate kinase -
  M8286_RS01110 (M8286_01120) - 207749..208444 (-) 696 WP_275601224.1 hypothetical protein -
  M8286_RS01115 (M8286_01125) recD/recD2/recDB 208562..211054 (-) 2493 WP_358637939.1 ATP-dependent RecD-like DNA helicase Machinery gene
  M8286_RS01120 (M8286_01130) lepB 211119..211748 (-) 630 WP_024402030.1 signal peptidase I -
  M8286_RS01125 (M8286_01135) rnhC 211758..212648 (-) 891 WP_275601227.1 ribonuclease HIII -
  M8286_RS01130 (M8286_01140) - 212733..213716 (+) 984 WP_358637942.1 Gfo/Idh/MocA family oxidoreductase -
  M8286_RS01135 (M8286_01145) - 214111..215400 (+) 1290 WP_275601228.1 LysM domain-containing protein -

Sequence

Protein


Download         Length: 830 a.a.        Molecular weight: 93208.37 Da        Isoelectric Point: 4.5225

>NTDB_id=595685 M8286_RS01115 WP_358637939.1 208562..211054(-) (recD/recD2/recDB) [Streptococcus suis strain 3112]
MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSEHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQITGLSSKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAHELTGLIADDKVQQEGTKIFDNSLYFAEHGIHKNLTRLMGKNGFKPFPRADVEAA
IAELESMSSLTYDDIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREEYPVLLAAPTGRAARRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEDGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEITYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQGEIAEQESKESLTENNESKTSIATPTQPPAQSDKPKQTEPVTENSQQLSLLDQDQLEKTSAQPR
EYILTVDNLLTIDPMIGIEQADIEEFFILK

Nucleotide


Download         Length: 2493 bp        

>NTDB_id=595685 M8286_RS01115 WP_358637939.1 208562..211054(-) (recD/recD2/recDB) [Streptococcus suis strain 3112]
ATGAATGAAGTTTATTTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATTGAGGAGACAGACGCAGACTATGATGACTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAGCAGTTGCAAATTTCGCGTTACGAACGTAGC
AAGCCTACCTCAGCTGGTCTGGTTAAGTATTTCTCCAGCGAGCATTTCAAGGGAATTGGACGTAAAACAGCTGAAAAAAT
CGTTGAGCTCTATGGCGAAGATACCATTGATAAGATTTTAGCTGAACCTGAAAAACTAACCCAAATCACAGGCCTATCCA
GCAAGAACATGCAGGCATTTGTCGAAAAACTCCGCCTCAATTATGGAACCGAGCTGATCTTGGCAAAACTAGCCGAGTAT
GGTATTCCAAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGCCTCGGCTTCACCATTGCCGATAGGATTGCGGAAAACCTGGGAATTGCCAGTGATT
CCCCCCAACGCTTTCGGGCAGGTATGCTCTTTAGCCTCATTCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCAACCCTTGAACTGCTGGAAAAATCCCGCCATACAGAACTGGACCCTGCCGCAGTTGCCCACGA
GTTGACAGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATAAAAACTTGACCCGCCTGATGGGGAAAAATGGCTTCAAGCCCTTCCCACGCGCAGACGTTGAGGCTGCC
ATAGCAGAGCTGGAAAGCATGTCTTCCCTGACCTACGATGACATTCAAAAGGAAGCCATCGTCCAAGCCATTACCAATCC
GCTTTTCATCCTGACAGGCGGACCAGGGACAGGAAAAACAACGGTTATCAACGGTATTATCGCGGTCTATGCCATCTTGC
ATAAGATTGACCTGACTCGCAACCGAGAGGAATACCCTGTCCTCCTAGCCGCTCCAACTGGACGAGCAGCCAGACGGATG
AATGAATTGACAGGTCTACCTTCTGCTACCATCCACCGCCATCTGGGGCTTGTTGAAGGACAGGAAGAATCCTACCGTGA
TGATTATTTGGATGCAGACTTTATCATCGTGGATGAGTTTTCTATGGTAGATACTTGGTTGGCAAACCAGCTCTTCCAGA
ACATCTCCTCCCAGACCCAAGTTCTGATTGTCGGCGATGCGGAGCAATTACCTTCTGTCAGTCCCGGTCAGGTCCTAGCT
GACCTCTTGAAAATTGACAAGCTACCCAGCATCACTCTAGAACGAATCTACCGTCAATCCGATGATTCGACCATTGTTAC
CCTAGCCAGCCAGATTCGCCAAGGTGCCCTGCCGAGTGATTTCCGTGAGAAAAAGGCTGACCGCTCCTATTTTGAAGCGC
AAAACGAACAAATTCCAGCCCTGATTGAACGCATTGTCGGCGCAGCTATCAAGTCCGGTATCCCTGCAAACGAGGTACAA
ATCCTCGCTCCCATGTACCGTGGTGCCGCAGGCATTGACCAACTCAATACCATGACACAGGCCCTGCTCAATCCCCTAGA
AGATGGAGAGCTGGAATTCCTCCACAACGAGCAAGCCTTCCGCCAAGGCGACCGAGTCATCCACCTAGTCAACGATGCCG
AAGCCAATGTCTTCAATGGTGATTTGGGCTACATCACCGACCTCCTGCCTGCCAAGTACACCGACTCCAAGCAGGACGAG
ATTACCATCAACTTCGACGGTAGCGAGATCACCTATCCCCGTAACGAATGGTACAAGATTACCCTGGCCTACGCCATGTC
CATCCACAAGTCCCAAGGTAGTGAGTTCCAGGTCGTTATCCTACCCATCACCCGCACCAGCCACCGCATGCTCCAGCGCA
ACCTGGTCTACACTGCCATCACCCGCTCCAAGAGCAAGCTCATCCTCCTGGGCGAAATCTCCGCCTTCGACTACGCCGTC
AAAAACGCCGGCACCGTCCGCAAGACCTATCTGGTCCCACGTTTCCAAGGCGAAATAGCAGAGCAGGAAAGCAAGGAAAG
CCTGACAGAAAACAATGAAAGTAAAACATCCATAGCCACGCCAACCCAGCCACCTGCTCAATCGGATAAGCCAAAACAAA
CAGAGCCAGTAACAGAAAACAGCCAGCAACTATCCCTTCTTGACCAAGACCAGCTAGAAAAAACAAGTGCCCAACCCAGA
GAATACATTCTGACGGTGGACAACCTGCTAACCATCGACCCCATGATCGGCATAGAGCAGGCAGATATTGAAGAGTTTTT
CATTCTTAAGTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-710)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-645)

AAA domain (AAA_30)

(332-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.27

91.084

0.376