Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   M9A05_RS10115 Genome accession   NZ_CP097575
Coordinates   2204708..2205133 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain UNC_PaerCF25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2199708..2210133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9A05_RS10100 (M9A05_10100) pilX 2200272..2200859 (+) 588 WP_003102605.1 type 4a pilus minor pilin PilX -
  M9A05_RS10105 (M9A05_10105) pilY1 2200871..2204362 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  M9A05_RS10110 (M9A05_10110) pilY2 2204364..2204711 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  M9A05_RS10115 (M9A05_10115) comF 2204708..2205133 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  M9A05_RS10120 (M9A05_10120) ispH 2205180..2206124 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  M9A05_RS10125 (M9A05_10125) fkpB 2206210..2206650 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  M9A05_RS10130 (M9A05_10130) lspA 2206643..2207152 (-) 510 WP_003102615.1 signal peptidase II -
  M9A05_RS10135 (M9A05_10135) ileS 2207145..2209976 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=595595 M9A05_RS10115 WP_003094721.1 2204708..2205133(+) (comF) [Pseudomonas aeruginosa strain UNC_PaerCF25]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=595595 M9A05_RS10115 WP_003094721.1 2204708..2205133(+) (comF) [Pseudomonas aeruginosa strain UNC_PaerCF25]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383