Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PAC42_RS31880 Genome accession   NZ_CP097560
Coordinates   6658781..6659305 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain C4.2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6653781..6664305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAC42_RS31865 (PAC42_31780) aroB 6654897..6656003 (-) 1107 WP_019726985.1 3-dehydroquinate synthase -
  PAC42_RS31870 (PAC42_31785) aroK 6656053..6656571 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PAC42_RS31875 (PAC42_31790) pilQ 6656583..6658727 (-) 2145 WP_003103267.1 type 4a pilus secretin PilQ Machinery gene
  PAC42_RS31880 (PAC42_31795) comL/pilP 6658781..6659305 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PAC42_RS31885 (PAC42_31800) pilO 6659302..6659925 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PAC42_RS31890 (PAC42_31805) pilN 6659922..6660517 (-) 596 Protein_6316 type 4a pilus biogenesis protein PilN -
  PAC42_RS31895 (PAC42_31810) pilM 6660517..6661581 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PAC42_RS31900 (PAC42_31815) - 6661766..6664237 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=595458 PAC42_RS31880 WP_003095836.1 6658781..6659305(-) (comL/pilP) [Pseudomonas aeruginosa strain C4.2]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=595458 PAC42_RS31880 WP_003095836.1 6658781..6659305(-) (comL/pilP) [Pseudomonas aeruginosa strain C4.2]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362