Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | K0029_RS18920 | Genome accession | NZ_CP081175 |
| Coordinates | 3642714..3643493 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus anthracis strain P04210076 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3608392..3682315 | 3642714..3643493 | within | 0 |
Gene organization within MGE regions
Location: 3608392..3682315
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K0029_RS18770 (K0029_18770) | - | 3608736..3610406 (-) | 1671 | WP_000823085.1 | ribonuclease J | - |
| K0029_RS18775 (K0029_18775) | dapA | 3611172..3612050 (-) | 879 | WP_000564761.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| K0029_RS18780 (K0029_18780) | dapG | 3612062..3613294 (-) | 1233 | WP_221082101.1 | aspartate kinase | - |
| K0029_RS18785 (K0029_18785) | asd | 3613318..3614364 (-) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| K0029_RS18790 (K0029_18790) | dpaB | 3614515..3615114 (-) | 600 | WP_001049484.1 | dipicolinate synthase subunit B | - |
| K0029_RS18795 (K0029_18795) | dpaA | 3615111..3616013 (-) | 903 | WP_000954726.1 | dipicolinic acid synthetase subunit A | - |
| K0029_RS18800 (K0029_18800) | - | 3616288..3616539 (-) | 252 | WP_001239752.1 | YlmC/YmxH family sporulation protein | - |
| K0029_RS18805 (K0029_18805) | - | 3616666..3617907 (-) | 1242 | WP_000592993.1 | pitrilysin family protein | - |
| K0029_RS18810 (K0029_18810) | - | 3617994..3618893 (-) | 900 | WP_000647529.1 | polysaccharide deacetylase family protein | - |
| K0029_RS18815 (K0029_18815) | pnp | 3619045..3621183 (-) | 2139 | WP_000076733.1 | polyribonucleotide nucleotidyltransferase | - |
| K0029_RS18820 (K0029_18820) | rpsO | 3621344..3621613 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| K0029_RS18825 (K0029_18825) | ribF | 3621714..3622685 (-) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| K0029_RS18830 (K0029_18830) | truB | 3622729..3623652 (-) | 924 | WP_000399357.1 | tRNA pseudouridine(55) synthase TruB | - |
| K0029_RS18835 (K0029_18835) | rbfA | 3623739..3624095 (-) | 357 | WP_000776446.1 | 30S ribosome-binding factor RbfA | - |
| K0029_RS18840 (K0029_18840) | - | 3624111..3624392 (-) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| K0029_RS18845 (K0029_18845) | infB | 3624389..3626449 (-) | 2061 | WP_000036339.1 | translation initiation factor IF-2 | - |
| K0029_RS18850 (K0029_18850) | - | 3626454..3626765 (-) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| K0029_RS18855 (K0029_18855) | rnpM | 3626766..3627038 (-) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| K0029_RS18860 (K0029_18860) | nusA | 3627050..3628156 (-) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| K0029_RS18865 (K0029_18865) | rimP | 3628174..3628644 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| K0029_RS18870 (K0029_18870) | - | 3628977..3633278 (-) | 4302 | WP_000059985.1 | PolC-type DNA polymerase III | - |
| K0029_RS18875 (K0029_18875) | - | 3633403..3635103 (-) | 1701 | WP_000814312.1 | proline--tRNA ligase | - |
| K0029_RS18880 (K0029_18880) | rseP | 3635213..3636469 (-) | 1257 | WP_001090228.1 | RIP metalloprotease RseP | - |
| K0029_RS18885 (K0029_18885) | dxr | 3636486..3637628 (-) | 1143 | WP_000790359.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| K0029_RS18890 (K0029_18890) | cdsA | 3637652..3638443 (-) | 792 | WP_000813581.1 | phosphatidate cytidylyltransferase | - |
| K0029_RS18895 (K0029_18895) | uppS | 3638461..3639237 (-) | 777 | WP_000971303.1 | isoprenyl transferase | - |
| K0029_RS18900 (K0029_18900) | frr | 3639323..3639880 (-) | 558 | WP_000531498.1 | ribosome recycling factor | - |
| K0029_RS18905 (K0029_18905) | pyrH | 3639883..3640605 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| K0029_RS18910 (K0029_18910) | tsf | 3640672..3641559 (-) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| K0029_RS18915 (K0029_18915) | rpsB | 3641663..3642364 (-) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| K0029_RS18920 (K0029_18920) | codY | 3642714..3643493 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| K0029_RS18925 (K0029_18925) | hslU | 3643571..3644962 (-) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| K0029_RS18930 (K0029_18930) | hslV | 3644985..3645527 (-) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| K0029_RS18935 (K0029_18935) | xerC | 3645570..3646469 (-) | 900 | WP_001101226.1 | tyrosine recombinase XerC | - |
| K0029_RS18940 (K0029_18940) | trmFO | 3646535..3647839 (-) | 1305 | WP_003161605.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| K0029_RS18945 (K0029_18945) | topA | 3647890..3649968 (-) | 2079 | WP_001286969.1 | type I DNA topoisomerase | - |
| K0029_RS18950 (K0029_18950) | dprA | 3650113..3650861 (-) | 749 | Protein_3702 | DNA-processing protein DprA | - |
| K0029_RS18955 (K0029_18955) | sucD | 3651069..3651971 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| K0029_RS18960 (K0029_18960) | sucC | 3651992..3653152 (-) | 1161 | WP_001020786.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| K0029_RS18965 (K0029_18965) | rnhB | 3653346..3654119 (-) | 774 | WP_001174712.1 | ribonuclease HII | - |
| K0029_RS18970 (K0029_18970) | ylqF | 3654171..3655061 (-) | 891 | WP_000236707.1 | ribosome biogenesis GTPase YlqF | - |
| K0029_RS18975 (K0029_18975) | lepB | 3655082..3655633 (-) | 552 | WP_000711857.1 | signal peptidase I | - |
| K0029_RS18980 (K0029_18980) | rplS | 3655735..3656079 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| K0029_RS18985 (K0029_18985) | trmD | 3656226..3656960 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| K0029_RS18990 (K0029_18990) | rimM | 3656960..3657475 (-) | 516 | WP_000170269.1 | ribosome maturation factor RimM | - |
| K0029_RS18995 (K0029_18995) | - | 3657596..3657823 (-) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| K0029_RS19000 (K0029_19000) | rpsP | 3657838..3658110 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| K0029_RS19005 (K0029_19005) | ffh | 3658211..3659560 (-) | 1350 | WP_000863456.1 | signal recognition particle protein | - |
| K0029_RS19010 (K0029_19010) | - | 3659573..3659905 (-) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| K0029_RS19015 (K0029_19015) | ftsY | 3660038..3661027 (-) | 990 | WP_000007650.1 | signal recognition particle-docking protein FtsY | - |
| K0029_RS19020 (K0029_19020) | smc | 3661043..3664612 (-) | 3570 | WP_000478985.1 | chromosome segregation protein SMC | - |
| K0029_RS19025 (K0029_19025) | rncS | 3664759..3665496 (-) | 738 | WP_001146873.1 | ribonuclease III | - |
| K0029_RS19030 (K0029_19030) | acpP | 3665555..3665788 (-) | 234 | WP_000786062.1 | acyl carrier protein | - |
| K0029_RS19035 (K0029_19035) | fabG | 3665858..3666598 (-) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| K0029_RS19040 (K0029_19040) | fabD | 3666598..3667542 (-) | 945 | WP_000516958.1 | ACP S-malonyltransferase | - |
| K0029_RS19045 (K0029_19045) | plsX | 3667557..3668549 (-) | 993 | WP_000684111.1 | phosphate acyltransferase PlsX | - |
| K0029_RS19050 (K0029_19050) | fapR | 3668546..3669139 (-) | 594 | WP_000747352.1 | transcription factor FapR | - |
| K0029_RS19055 (K0029_19055) | recG | 3669228..3671276 (-) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| K0029_RS19060 (K0029_19060) | - | 3671566..3673242 (-) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| K0029_RS19065 (K0029_19065) | - | 3673265..3673627 (-) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| K0029_RS19070 (K0029_19070) | rpmB | 3674006..3674194 (+) | 189 | WP_000124778.1 | 50S ribosomal protein L28 | - |
| K0029_RS19075 (K0029_19075) | spoVM | 3674267..3674347 (-) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| K0029_RS19080 (K0029_19080) | - | 3674414..3675094 (-) | 681 | WP_025388434.1 | thiamine diphosphokinase | - |
| K0029_RS19085 (K0029_19085) | rpe | 3675194..3675838 (-) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| K0029_RS19090 (K0029_19090) | rsgA | 3675841..3676722 (-) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| K0029_RS19095 (K0029_19095) | prkC | 3676991..3678964 (-) | 1974 | WP_000904759.1 | serine/threonine protein kinase PrkC | - |
| K0029_RS19100 (K0029_19100) | - | 3678973..3679725 (-) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| K0029_RS19105 (K0029_19105) | rlmN | 3679730..3680818 (-) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| K0029_RS19110 (K0029_19110) | rsmB | 3680823..3682157 (-) | 1335 | WP_001249680.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=595456 K0029_RS18920 WP_000421288.1 3642714..3643493(-) (codY) [Bacillus anthracis strain P04210076]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=595456 K0029_RS18920 WP_000421288.1 3642714..3643493(-) (codY) [Bacillus anthracis strain P04210076]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |