Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PAC42_RS29310 Genome accession   NZ_CP097560
Coordinates   6084689..6085114 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain C4.2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6079689..6090114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAC42_RS29295 (PAC42_29215) pilX 6080253..6080840 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PAC42_RS29300 (PAC42_29220) pilY1 6080852..6084343 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  PAC42_RS29305 (PAC42_29225) pilY2 6084345..6084692 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PAC42_RS29310 (PAC42_29230) comF 6084689..6085114 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PAC42_RS29315 (PAC42_29235) ispH 6085161..6086105 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PAC42_RS29320 (PAC42_29240) fkpB 6086191..6086631 (-) 441 WP_023108763.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PAC42_RS29325 (PAC42_29245) lspA 6086624..6087133 (-) 510 WP_003102615.1 signal peptidase II -
  PAC42_RS29330 (PAC42_29250) ileS 6087126..6089957 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=595452 PAC42_RS29310 WP_003094721.1 6084689..6085114(+) (comF) [Pseudomonas aeruginosa strain C4.2]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=595452 PAC42_RS29310 WP_003094721.1 6084689..6085114(+) (comF) [Pseudomonas aeruginosa strain C4.2]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383