Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   K6J57_RS08065 Genome accession   NZ_AP018770
Coordinates   1605629..1606969 (-) Length   446 a.a.
NCBI ID   WP_042593980.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-7 isolate 13H35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1600629..1611969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J57_RS08045 (CHBNII7_15370) - 1600977..1602497 (-) 1521 WP_005690076.1 Na+/H+ antiporter NhaC family protein -
  K6J57_RS08050 (CHBNII7_15380) - 1602939..1603343 (+) 405 WP_005647241.1 H-NS family nucleoid-associated regulatory protein -
  K6J57_RS08055 (CHBNII7_15390) purU 1603413..1604249 (+) 837 WP_005661478.1 formyltetrahydrofolate deformylase -
  K6J57_RS08060 (CHBNII7_15400) aroA 1604249..1605547 (+) 1299 WP_042593979.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  K6J57_RS08065 (CHBNII7_15410) rarA 1605629..1606969 (-) 1341 WP_042593980.1 replication-associated recombination protein A Machinery gene
  K6J57_RS08070 (CHBNII7_15420) lolA 1607030..1607647 (-) 618 WP_005690067.1 outer membrane lipoprotein chaperone LolA -
  K6J57_RS08075 (CHBNII7_15430) - 1607665..1610433 (-) 2769 WP_042593981.1 DNA translocase FtsK -
  K6J57_RS08080 (CHBNII7_15440) lrp 1610435..1610914 (-) 480 WP_005653255.1 leucine-responsive transcriptional regulator Lrp -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50233.10 Da        Isoelectric Point: 6.3320

>NTDB_id=59499 K6J57_RS08065 WP_042593980.1 1605629..1606969(-) (rarA) [Haemophilus influenzae strain CHBN-II-7 isolate 13H35]
MSNLNFDFAENDFRPLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVER
ISAVTSGIKEIREAIERAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVY
VLKSLTTAEIEQVLQQAIEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAEETENGKKIDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSAVKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=59499 K6J57_RS08065 WP_042593980.1 1605629..1606969(-) (rarA) [Haemophilus influenzae strain CHBN-II-7 isolate 13H35]
ATGTCTAACCTCAATTTTGATTTTGCCGAAAATGATTTTCGCCCACTGGCGGCCAAGATGCGTCCAACGAGTCTAGAACA
ATATTTTGGGCAAAGCCATTTAATTGGCGAGGGCAAGCCACTGCGAAAAGCTATCCAAGCTGGTCATATTCATTCTATGA
TTTTGTGGGGCCCACCAGGTACAGGAAAAACAACGCTCGCAGAAATCATAGCACAACGTATTAATGCGGAAGTAGAGCGA
ATTTCTGCGGTGACGAGTGGTATCAAAGAAATTCGTGAAGCGATTGAGCGAGCAAAACAAAATCGTCTTGCGGATCGTAA
AACTATCTTATTTGTGGATGAAGTCCATCGTTTTAATAAAAGCCAGCAAGATGCATTTTTACCGCACATTGAAGACGGAA
CCGTTATTTTTATTGGGGCGACAACAGAAAATCCCTCTTTTGAGCTAAATAATGCGTTGCTTTCTCGTGCCCGAGTGTAT
GTGCTGAAATCACTCACAACGGCTGAAATTGAACAAGTTTTGCAGCAAGCTATAGAAGATCCTGAACGTGGATTGGGTAA
AGAGCGGTTAATTTTAGAAGAGAATTTACTGCAAGTGCTTGCCGAATATGTTAATGGGGATGCACGATTAGCCTTGAATT
GCCTCGAATTAATGGTGGATATGGCAGAAGAAACGGAAAATGGAAAGAAAATTGACCGCACTTTATTAAAAGAAGTCTTA
GGTGAACGTCAAGCGAGATTTGATAAACAAGGTGATCGTTTCTATGATTTAATTTCTGCGCTACATAAATCTGTTCGCGG
TTCTGCTCCAGACGCAGCACTGTATTGGTATGCAAGAATTTTAACAGCGGGTGGAGACCCTTTATATGTTGCGCGCCGAT
TACTTGCCATTGCTTCAGAAGATGTGGGAAATGCAGATCCTCGTGCTATGCAAGTCGCATTGGCTGCTTGGGATTGCTTT
ACTCGAGTGGGGGCTTATGAAGGGGAGCGAGCCATCGCCCAAGCCATTATTTATCTTGCAGTAGCCCCAAAAAGTAATGC
GGTTTATACCGCATTTAACACTGCGAAACAGCAAGCGAAAGATTTGCCAGATTACGATGTTCCACCACATTTACGCAATG
CGCCGACTAATTTAATGAAAGAACTTGGCTATGGGGCTGAATATCGTTATGCCCACGATGAACCTAACGCTTATGCGGCA
GGCGAAAATTATTTCCCACCTGAATTAAAAGATACTCAATATTATTTTCCGACAAATAGAGGTATGGAAATTCAGATTAA
GGAAAAACTAGAACGGTTACGTGAGCAAGATAAAAGTGCGGTGAAAAAACGGTATAAATAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

ATPase family associated with various cellular activities (AAA) (AAA)

(53-159)

AAA C-terminal domain (AAA_assoc_2)

(188-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.243

94.843

0.372

Multiple sequence alignment