Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   K6J61_RS05580 Genome accession   NZ_AP018769
Coordinates   1142979..1144319 (+) Length   446 a.a.
NCBI ID   WP_011272475.1    Uniprot ID   Q4QL22
Organism   Haemophilus influenzae strain CHBN-II-6 isolate 12H01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1137979..1149319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J61_RS05565 (CHBNII6_10460) lrp 1139034..1139513 (+) 480 WP_005653255.1 leucine-responsive transcriptional regulator Lrp -
  K6J61_RS05570 (CHBNII6_10470) - 1139515..1142283 (+) 2769 WP_044365032.1 DNA translocase FtsK -
  K6J61_RS05575 (CHBNII6_10480) lolA 1142301..1142918 (+) 618 WP_005661471.1 outer membrane lipoprotein chaperone LolA -
  K6J61_RS05580 (CHBNII6_10490) rarA 1142979..1144319 (+) 1341 WP_011272475.1 replication-associated recombination protein A Machinery gene
  K6J61_RS05585 (CHBNII6_10500) - 1144407..1145549 (-) 1143 WP_011272476.1 hypothetical protein -
  K6J61_RS05590 (CHBNII6_10510) dcm 1145559..1146782 (-) 1224 WP_011272477.1 DNA (cytosine-5-)-methyltransferase -
  K6J61_RS05595 (CHBNII6_10520) aroA 1147037..1148335 (-) 1299 WP_011272478.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  K6J61_RS05600 (CHBNII6_10530) purU 1148335..1149171 (-) 837 WP_005661478.1 formyltetrahydrofolate deformylase -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50278.16 Da        Isoelectric Point: 6.3312

>NTDB_id=59433 K6J61_RS05580 WP_011272475.1 1142979..1144319(+) (rarA) [Haemophilus influenzae strain CHBN-II-6 isolate 12H01]
MSNLNFDFAENDFRPLAAKMRPTNLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVER
ISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVY
VLKSLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADEMENGKKIDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSTVKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=59433 K6J61_RS05580 WP_011272475.1 1142979..1144319(+) (rarA) [Haemophilus influenzae strain CHBN-II-6 isolate 12H01]
ATGTCTAACCTCAATTTTGATTTTGCCGAAAATGATTTTCGCCCACTGGCGGCCAAGATGCGTCCAACAAATCTAGAACA
ATATTTTGGGCAAAGCCATTTAATTGGCGAGGGCAAGCCACTGCGAAAAGCTATCCAAGCTGGGCATATTCATTCTATGA
TTTTGTGGGGCCCACCAGGTACGGGGAAAACAACCCTTGCAGAAATCATAGCACAACGTATTAATGCAGAAGTAGAGCGA
ATTTCTGCGGTGACGAGTGGTATCAAAGAAATTCGTGAAGCGATTGATCGTGCAAAACAAAATCGTCTTGCGGATCGTAA
AACTATCTTATTTGTGGATGAAGTCCATCGTTTTAATAAAAGCCAGCAAGATGCATTTTTACCGCACATTGAAGACGGAA
CCGTTATTTTTATTGGGGCGACAACAGAAAATCCCTCTTTTGAGCTAAATAATGCGTTGCTTTCTCGTGCCCGAGTGTAT
GTGCTGAAATCACTCACAACGGCTGAAATTGAACAAGTTTTGCAGCAAGCTGTAGAAGATCCTGAACGAGGATTGGGTAA
AGAGCGGTTAATTTTAGAAGAGAATTTACTGCAAGTGCTTGCCGAATATGTTAATGGGGATGCACGATTAGCCTTGAATT
GCCTCGAATTAATGGTGGATATGGCAGATGAAATGGAAAATGGAAAGAAAATTGACCGCACTTTATTAAAAGAAGTCTTA
GGCGAACGTCAAGCGAGATTTGATAAACAAGGTGATCGTTTCTATGATTTAATTTCTGCGCTACATAAATCTGTTCGAGG
TTCTGCTCCAGACGCTGCACTGTATTGGTATGCAAGAATTTTAACGGCAGGTGGCGATCCTTTATATGTCGCGCGCCGAT
TACTTGCCATTGCTTCAGAAGATGTGGGAAATGCAGATCCTCGTGCTATGCAAGTTGCATTGGCTGCTTGGGATTGCTTT
ACTCGAGTGGGGGCTTATGAAGGAGAGAGAGCCATCGCCCAAGCCATTATATATCTCGCAGTAGCGCCAAAAAGTAATGC
GGTTTATACTGCATTTAACACAGCAAAACAGCAAGCGAAAGATTTGCCCGATTACGATGTTCCACCACATTTACGCAATG
CGCCAACTAATTTAATGAAAGAGCTTGGCTATGGGGCTGAATATCGTTATGCTCACGATGAACCTAACGCTTATGCGGCA
GGCGAAAATTATTTCCCACCTGAATTAAAAGATACTCAATATTATTTTCCAACGAATAGAGGTATGGAAATTCAGATTAA
GGAAAAACTAGAACGATTACGTGAGCAAGATAAAAGTACGGTGAAAAAACGGTATAAATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(188-266)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

ATPase family associated with various cellular activities (AAA) (AAA)

(53-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3BGE

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.243

94.843

0.372

Multiple sequence alignment