Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KTJ85_RS01640 Genome accession   NZ_CP080509
Coordinates   325677..326114 (-) Length   145 a.a.
NCBI ID   WP_212100261.1    Uniprot ID   -
Organism   Bacillus sp. 7D3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 320677..331114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTJ85_RS01615 (KTJ85_01615) - 321695..322831 (+) 1137 WP_071348421.1 zinc-dependent alcohol dehydrogenase -
  KTJ85_RS01620 (KTJ85_01620) - 322846..323280 (+) 435 WP_013350964.1 RDD family protein -
  KTJ85_RS01625 (KTJ85_01625) - 323353..323676 (+) 324 WP_212100253.1 YckD family protein -
  KTJ85_RS01630 (KTJ85_01630) - 323781..325217 (+) 1437 WP_212100256.1 glycoside hydrolase family 1 protein -
  KTJ85_RS01635 (KTJ85_01635) nin/comJ 325258..325656 (-) 399 WP_212100259.1 competence protein ComJ Regulator
  KTJ85_RS01640 (KTJ85_01640) nucA/comI 325677..326114 (-) 438 WP_212100261.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KTJ85_RS01645 (KTJ85_01645) hxlB 326464..327021 (-) 558 WP_212100263.1 6-phospho-3-hexuloisomerase -
  KTJ85_RS01650 (KTJ85_01650) hxlA 327018..327653 (-) 636 WP_212100265.1 3-hexulose-6-phosphate synthase -
  KTJ85_RS01655 (KTJ85_01655) - 327885..328247 (+) 363 WP_013350971.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16086.38 Da        Isoelectric Point: 8.4850

>NTDB_id=593365 KTJ85_RS01640 WP_212100261.1 325677..326114(-) (nucA/comI) [Bacillus sp. 7D3]
MKTLKALLLVLIIIAGAVAALIKGDIFSDNEQTVQKSDYDKLILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=593365 KTJ85_RS01640 WP_212100261.1 325677..326114(-) (nucA/comI) [Bacillus sp. 7D3]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATATTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGTTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTAAAAACAGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCAGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641