Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   K0V03_RS19930 Genome accession   NZ_CP080508
Coordinates   3744204..3744983 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain HD15     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3739204..3749983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS19910 (K0V03_19910) trmFO 3739897..3741204 (+) 1308 WP_085186067.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  K0V03_RS19915 (K0V03_19915) xerC 3741272..3742186 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  K0V03_RS19920 (K0V03_19920) clpQ 3742199..3742744 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  K0V03_RS19925 (K0V03_19925) hslU 3742761..3744164 (+) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  K0V03_RS19930 (K0V03_19930) codY 3744204..3744983 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  K0V03_RS19935 (K0V03_19935) flgB 3745363..3745752 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  K0V03_RS19940 (K0V03_19940) flgC 3745752..3746204 (+) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  K0V03_RS19945 (K0V03_19945) fliE 3746215..3746535 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  K0V03_RS19950 (K0V03_19950) fliF 3746581..3748191 (+) 1611 WP_043940114.1 flagellar basal-body MS-ring/collar protein FliF -
  K0V03_RS19955 (K0V03_19955) fliG 3748204..3749220 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  K0V03_RS19960 (K0V03_19960) fliH 3749213..3749965 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=593354 K0V03_RS19930 WP_003220850.1 3744204..3744983(+) (codY) [Bacillus subtilis strain HD15]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=593354 K0V03_RS19930 WP_003220850.1 3744204..3744983(+) (codY) [Bacillus subtilis strain HD15]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467