Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   K0819_RS15095 Genome accession   NZ_CP080478
Coordinates   3171331..3172056 (+) Length   241 a.a.
NCBI ID   WP_031501650.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Vp2015094     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3166331..3177056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0819_RS15080 (K0819_15015) - 3167434..3169755 (+) 2322 WP_015296085.1 Tex family protein -
  K0819_RS15085 (K0819_15020) - 3169891..3170355 (-) 465 WP_005459035.1 hypothetical protein -
  K0819_RS15090 (K0819_15025) bioH 3170479..3171246 (-) 768 WP_029785475.1 pimeloyl-ACP methyl ester esterase BioH -
  K0819_RS15095 (K0819_15030) comF 3171331..3172056 (+) 726 WP_031501650.1 amidophosphoribosyltransferase Machinery gene
  K0819_RS15100 (K0819_15035) nfuA 3172154..3172738 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  K0819_RS15105 (K0819_15040) nudE 3172959..3173528 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  K0819_RS15110 (K0819_15045) cysQ 3173569..3174396 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  K0819_RS15115 (K0819_15050) - 3174683..3175444 (-) 762 WP_005496730.1 type II secretion system protein N -
  K0819_RS15120 (K0819_15055) - 3175446..3175937 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27670.87 Da        Isoelectric Point: 9.3588

>NTDB_id=593205 K0819_RS15095 WP_031501650.1 3171331..3172056(+) (comF) [Vibrio parahaemolyticus strain Vp2015094]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCNHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHIRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSNILARHLAGHLNVRFDN
HVFRRVKHAQSQRGNKKSSRELNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=593205 K0819_RS15095 WP_031501650.1 3171331..3172056(+) (comF) [Vibrio parahaemolyticus strain Vp2015094]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTAATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATAT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTATTTGTATCGAGGCTTTAATCAGAGCAACATACTGGCGCGACATTTGGCTGGCCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCGCAGCGCGGGAACAAGAAATCCAGCCGAGAACTGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.369

100

0.714
  comF Vibrio cholerae strain A1552

48.739

98.755

0.481