Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   M2J01_RS26070 Genome accession   NZ_CP096964
Coordinates   5581255..5581680 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain NY13936     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5576255..5586680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2J01_RS26055 (M2J01_25995) pilX 5576819..5577406 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  M2J01_RS26060 (M2J01_26000) pilY1 5577418..5580909 (+) 3492 WP_033956576.1 type 4a pilus biogenesis protein PilY1 -
  M2J01_RS26065 (M2J01_26005) pilY2 5580911..5581258 (+) 348 WP_021264112.1 type 4a fimbrial biogenesis protein PilY2 -
  M2J01_RS26070 (M2J01_26010) comF 5581255..5581680 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  M2J01_RS26075 (M2J01_26015) ispH 5581731..5582675 (-) 945 WP_003134939.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  M2J01_RS26080 (M2J01_26020) fkpB 5582761..5583201 (-) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  M2J01_RS26085 (M2J01_26025) lspA 5583194..5583703 (-) 510 WP_003094728.1 signal peptidase II -
  M2J01_RS26090 (M2J01_26030) ileS 5583696..5586527 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=593138 M2J01_RS26070 WP_003094721.1 5581255..5581680(+) (comF) [Pseudomonas aeruginosa strain NY13936]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=593138 M2J01_RS26070 WP_003094721.1 5581255..5581680(+) (comF) [Pseudomonas aeruginosa strain NY13936]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383