Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   K1T74_RS20000 Genome accession   NZ_CP080462
Coordinates   211641..212501 (-) Length   286 a.a.
NCBI ID   WP_309474174.1    Uniprot ID   -
Organism   Vibrio cholerae strain ICDC-VC702     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 206641..217501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T74_RS01000 gspL 206899..208110 (+) 1212 WP_162809905.1 type II secretion system protein GspL -
  K1T74_RS01005 - 208120..208617 (+) 498 WP_165819073.1 type II secretion system protein M -
  K1T74_RS01010 - 208619..209377 (+) 759 WP_002044745.1 type II secretion system protein N -
  K1T74_RS01015 cysQ 209429..210256 (-) 828 WP_053031812.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  K1T74_RS01020 nudE 210279..210827 (-) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  K1T74_RS01025 nfuA 210966..211553 (-) 588 WP_142734855.1 Fe-S biogenesis protein NfuA -
  K1T74_RS20000 comF 211641..212501 (-) 861 WP_309474174.1 ComF family protein Machinery gene
  K1T74_RS01040 bioH 212437..213198 (+) 762 WP_001240448.1 pimeloyl-ACP methyl ester esterase BioH -
  K1T74_RS01045 - 213361..213831 (+) 471 WP_000961393.1 hypothetical protein -
  K1T74_RS01050 - 213926..216247 (-) 2322 WP_220105954.1 Tex family protein -
  K1T74_RS01055 greB 216492..216974 (+) 483 WP_000850494.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32541.50 Da        Isoelectric Point: 8.0586

>NTDB_id=593074 K1T74_RS20000 WP_309474174.1 211641..212501(-) (comF) [Vibrio cholerae strain ICDC-VC702]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDKNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLSQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWQRRWLRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=593074 K1T74_RS20000 WP_309474174.1 211641..212501(-) (comF) [Vibrio cholerae strain ICDC-VC702]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCACTCGATAAAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGACCAGTGCGGACAGTGTTTGAGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTTCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTGCTCGCCACCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGTGTACCGCTACATTGGCAGCGACGTTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGTGAATTAGCCAATGTGCTGAACATTGAATATGATCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGCGATGCGTTTGTGCTCAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

97.902

100

0.979
  comF Vibrio campbellii strain DS40M4

47.059

83.217

0.392