Detailed information NTG0592982

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: Sta0113_RS09405
• Genome accession: NZ_CP080457
• Coordinates: 1923129..1925552 (-)
• Length: 807 a.a.
• NCBI ID: WP_137689462.1
• Uniprot ID: -
• Organism: Staphylococcus hominis subsp. hominis strain WiKim0113
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1918129..1930552

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Sta0113_RS09380 (Sta0113_09315)	-	1918240..1918875 (-)	636	WP_017176181.1	O-methyltransferase	-
Sta0113_RS09385 (Sta0113_09320)	-	1919136..1919450 (-)	315	WP_017176180.1	DUF1292 domain-containing protein	-
Sta0113_RS09390 (Sta0113_09325)	ruvX	1919465..1919893 (-)	429	WP_248855199.1	Holliday junction resolvase RuvX	-
Sta0113_RS09395 (Sta0113_09330)	-	1919894..1920154 (-)	261	WP_002448947.1	IreB family regulatory phosphoprotein	-
Sta0113_RS09400 (Sta0113_09335)	alaS	1920219..1922849 (-)	2631	WP_248855200.1	alanine--tRNA ligase	-
Sta0113_RS09405 (Sta0113_09340)	recD2	1923129..1925552 (-)	2424	WP_137689462.1	ATP-dependent RecD-like DNA helicase	Machinery gene
Sta0113_RS09410 (Sta0113_09345)	-	1925554..1926225 (-)	672	WP_248855201.1	tetratricopeptide repeat protein	-
Sta0113_RS09415 (Sta0113_09350)	mnmA	1926312..1927424 (-)	1113	WP_017176175.1	tRNA 2-thiouridine(34) synthase MnmA	-
Sta0113_RS09420 (Sta0113_09355)	-	1927428..1928567 (-)	1140	WP_017176174.1	cysteine desulfurase family protein	-
Sta0113_RS09425 (Sta0113_09360)	-	1928767..1929771 (+)	1005	WP_049382006.1	LLM class flavin-dependent oxidoreductase	-
Sta0113_RS09430 (Sta0113_09365)	-	1929870..1930013 (-)	144	WP_017176172.1	SAS049 family protein	-
Sta0113_RS09435 (Sta0113_09370)	-	1930123..1930545 (-)	423	WP_002448977.1	Rrf2 family transcriptional regulator	-

Sequence

Protein

• Length: 807 a.a.
• Molecular weight: 91686.09 Da
• Isoelectric Point: 4.7254

>NTDB_id=592982 Sta0113_RS09405 WP_137689462.1 1923129..1925552(-) (recD2) [Staphylococcus hominis subsp. hominis strain WiKim0113]
MSNPTLFDYSMVKGTVDTILFQNKDNFYTVLKVDSIETNELFDNLPTVVGFFPNIVEGDVYTFKGQIVQHPRYGKQLKAE
TFEKELPQTKDAIISYLSSDLFKGIGKKTAQNIVNTLGENAINDILTDPSVLENVPSLAKSKQKQIAEQISANQESEKIM
IRLHDLGFGPKLSMAIYQFYQSETLKILENNPYQLVYDVKGIGFQKADTLARNNGIAYNDSERLKAGLLYTLEEECIKQG
HTYLDENAVLEITEDMLSDKHLDETIEQEQLKHVLQTLFEEKKIILENSHVAIPSLYYSELKSVQNLYRINTYKNHFKII
EQSDLQIHIGEIEDQNNVNYAKSQQEALETAMNSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLKYSDYQEDDYPIVL
AAPTGRASKRLQESTGLEAMTIHRLIGWNQDTQPEDILENEIKAKLIIIDEMSMVDSWLFHQFLSAVPLDAQIILVGDED
QLPSVGPGQVFKDLIESKAFPRVNLTEVYRQQDGSSIIDLAHRMKHHESIDITKRYHDRSFIHCNVEQIPTVVEKVVSSA
VNKGYDMSDIQVLAPMYKGSAGIKRLNQVLQNILNPKEKDTREIEFGDIKFRKGDKVLQLVNRPNDNIFNGDIGVIVGIF
WAKENALNKDVLIVDFEGNEITFTRQDLLELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKQSLVL
LGDPKAFDIALNTQGQERHTQLKTLIINYFGMSQVNIDVEENDEPINIDDTEDNNADEHITLSEETIYQINPMINMGNVS
PYDFVEH

Nucleotide

• Length: 2424 bp

>NTDB_id=592982 Sta0113_RS09405 WP_137689462.1 1923129..1925552(-) (recD2) [Staphylococcus hominis subsp. hominis strain WiKim0113]
ATGTCAAACCCTACACTATTTGATTACTCAATGGTTAAAGGAACAGTTGATACCATTCTATTTCAAAATAAAGATAACTT
TTATACTGTTTTAAAAGTAGATTCCATTGAAACTAATGAATTATTTGATAATCTGCCTACAGTTGTAGGGTTTTTTCCTA
ATATTGTTGAAGGAGATGTCTATACGTTTAAAGGACAAATTGTTCAACATCCTCGTTATGGTAAACAACTTAAAGCTGAA
ACATTTGAAAAAGAACTGCCTCAAACTAAAGATGCCATAATAAGTTATTTATCTAGTGATTTATTTAAAGGTATTGGTAA
AAAGACTGCTCAGAATATTGTAAATACATTAGGAGAAAATGCAATAAATGATATTTTAACTGATCCTTCTGTTCTCGAAA
ACGTTCCTAGTTTAGCAAAATCGAAACAAAAACAGATTGCAGAACAAATTAGTGCAAATCAAGAGTCAGAAAAAATAATG
ATTCGCTTACATGACTTAGGTTTTGGTCCAAAATTATCCATGGCGATTTATCAATTTTATCAATCAGAGACTTTAAAAAT
TCTAGAAAACAATCCATACCAATTAGTTTATGATGTAAAAGGTATTGGTTTTCAAAAAGCTGATACATTAGCTAGAAATA
ATGGTATTGCTTATAACGATTCAGAACGTTTAAAAGCTGGGTTATTATATACTCTTGAAGAAGAATGTATAAAACAGGGA
CATACTTATTTAGATGAAAATGCTGTATTAGAAATTACAGAAGATATGCTTTCAGATAAGCATTTAGATGAAACAATTGA
ACAAGAACAATTAAAACATGTGCTACAAACACTTTTTGAAGAAAAGAAAATTATTTTAGAGAATAGTCATGTTGCGATTC
CAAGTTTATACTATTCAGAACTTAAAAGTGTTCAAAATTTGTATCGTATCAACACATACAAAAATCACTTTAAAATAATA
GAGCAATCAGATTTACAGATACATATTGGTGAAATAGAAGATCAAAATAATGTTAATTATGCTAAATCACAACAAGAAGC
ACTTGAAACGGCGATGAATTCGAAAATAATGTTACTAACTGGAGGTCCAGGAACAGGTAAAACAACTGTTATTAAAGGGA
TTGTAGAATTGTATGCTGAAATTCATGGTCTATCTCTTAAGTATTCCGATTATCAAGAAGATGATTATCCAATCGTATTA
GCCGCCCCAACTGGAAGGGCATCAAAACGTTTACAAGAATCAACTGGATTAGAAGCAATGACGATTCATCGATTAATAGG
ATGGAATCAAGATACTCAACCAGAAGATATTCTTGAAAATGAAATTAAAGCTAAGCTCATTATAATTGATGAAATGTCAA
TGGTTGATTCTTGGTTGTTCCATCAATTTTTAAGTGCCGTTCCACTAGATGCACAAATTATTCTAGTAGGCGATGAAGAT
CAATTGCCGTCTGTCGGTCCTGGCCAAGTATTTAAGGATTTAATTGAGTCTAAAGCATTTCCAAGAGTTAATTTAACTGA
AGTTTATCGCCAACAAGATGGTTCTAGTATTATTGACTTAGCTCATCGCATGAAACATCATGAGTCAATAGATATTACAA
AACGTTATCACGATAGAAGTTTTATTCATTGCAATGTAGAACAAATTCCAACCGTAGTGGAGAAAGTAGTATCTAGCGCT
GTAAATAAAGGATATGATATGAGTGATATTCAAGTTTTAGCACCTATGTACAAAGGAAGTGCAGGGATAAAAAGACTTAA
TCAAGTATTACAAAATATTTTAAATCCTAAAGAAAAAGATACAAGAGAAATAGAGTTTGGCGATATAAAGTTTAGAAAAG
GAGACAAAGTTTTACAACTAGTTAATCGACCAAATGACAATATTTTTAATGGTGATATTGGCGTCATAGTAGGTATATTT
TGGGCTAAAGAAAATGCACTTAATAAAGATGTACTGATTGTCGATTTTGAAGGAAATGAAATTACATTTACTAGACAAGA
TTTATTAGAACTCACACATGCTTATTGTACCTCAATCCATAAATCACAAGGATCAGAATTCCCAATTGTTATTATGCCTA
TTGTCAAACAATATTTTAGAATGTTGCAAAGACCTATTTTATATACAGGTCTGACACGTGCAAAACAATCTTTAGTACTA
TTAGGAGATCCAAAAGCATTTGACATTGCCTTAAATACTCAAGGTCAAGAAAGACATACACAATTAAAAACACTAATTAT
AAATTATTTTGGTATGAGTCAGGTTAATATAGACGTAGAAGAGAATGATGAACCGATAAATATAGATGATACAGAGGATA
ATAATGCAGATGAACACATTACTTTAAGTGAAGAAACAATTTATCAAATTAATCCAATGATTAATATGGGAAATGTTTCA
CCTTACGACTTTGTTGAACATTGA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (586-656)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (673-721)

• AAA domain (AAA_30) (340-545)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.378	99.628	0.492