Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   K0U91_RS09815 Genome accession   NZ_CP080443
Coordinates   2099172..2099822 (-) Length   216 a.a.
NCBI ID   WP_220180504.1    Uniprot ID   A0A8F9RKH9
Organism   Chryseobacterium sp. LJ668     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2094172..2104822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0U91_RS09790 (K0U91_09790) - 2095249..2095662 (-) 414 WP_219970520.1 thiol-disulfide oxidoreductase DCC family protein -
  K0U91_RS09795 (K0U91_09795) - 2095670..2096134 (-) 465 WP_220180507.1 heme-binding domain-containing protein -
  K0U91_RS09800 (K0U91_09800) der 2096357..2097667 (+) 1311 WP_219970522.1 ribosome biogenesis GTPase Der -
  K0U91_RS09805 (K0U91_09805) upp 2097773..2098423 (+) 651 WP_220180506.1 uracil phosphoribosyltransferase -
  K0U91_RS09810 (K0U91_09810) - 2098427..2099116 (-) 690 WP_220180505.1 alpha/beta fold hydrolase -
  K0U91_RS09815 (K0U91_09815) comF 2099172..2099822 (-) 651 WP_220180504.1 ComF family protein Machinery gene
  K0U91_RS09820 (K0U91_09820) - 2099918..2100364 (+) 447 WP_219970526.1 6-carboxytetrahydropterin synthase -
  K0U91_RS09825 (K0U91_09825) - 2100389..2101162 (+) 774 WP_220180503.1 UDP-2,3-diacylglucosamine diphosphatase -
  K0U91_RS09830 (K0U91_09830) - 2101360..2102355 (+) 996 WP_220180502.1 acyl transferase -
  K0U91_RS09835 (K0U91_09835) - 2102381..2102926 (+) 546 WP_220180501.1 hypothetical protein -
  K0U91_RS09840 (K0U91_09840) aqpZ 2102973..2103689 (-) 717 WP_220180500.1 aquaporin Z -
  K0U91_RS09845 (K0U91_09845) - 2103922..2104539 (+) 618 WP_220180499.1 DUF5715 family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25554.67 Da        Isoelectric Point: 8.6028

>NTDB_id=592910 K0U91_RS09815 WP_220180504.1 2099172..2099822(-) (comF) [Chryseobacterium sp. LJ668]
MILDLFFPNRCIRCNRIIEGDLLVCTICFQQIHFTHFDYFSDNSLKEKCKLLFPIEQAYALMQFEQENLSRKIIHELKYR
GREKTGKILAEWITERLEFKNMKPDLLVSVPLHPKKEKERGYNQLHLFTKTLSEFYNIPYDHDLLKRNHYSKAQALKDKK
HRLETQNTFSLTKSISNQHVLLIDDVFTTGNTLSTIAWEILQKGNKVSVLVMAMDE

Nucleotide


Download         Length: 651 bp        

>NTDB_id=592910 K0U91_RS09815 WP_220180504.1 2099172..2099822(-) (comF) [Chryseobacterium sp. LJ668]
ATGATTTTAGATTTATTTTTCCCAAACCGGTGCATTCGCTGCAATAGAATTATCGAGGGTGATTTACTGGTCTGTACTAT
ATGTTTTCAACAAATTCACTTTACCCATTTTGATTATTTTTCAGATAACAGCTTAAAAGAAAAATGTAAATTACTATTTC
CTATCGAGCAAGCATATGCTTTGATGCAGTTTGAACAGGAAAATTTAAGCAGAAAAATCATTCATGAACTTAAATACCGA
GGTCGTGAAAAAACAGGAAAGATTCTTGCCGAATGGATAACGGAAAGGTTAGAATTTAAAAATATGAAGCCAGATCTTTT
GGTAAGCGTTCCTCTTCATCCCAAAAAGGAAAAAGAGAGAGGCTACAATCAATTGCACCTGTTTACCAAAACCCTGTCTG
AATTTTATAATATTCCTTATGACCATGACTTGTTGAAGAGAAATCATTACTCTAAAGCTCAGGCATTAAAAGATAAAAAG
CACCGTCTTGAAACCCAAAATACATTTTCTTTAACCAAAAGTATTTCAAATCAACATGTATTGCTGATTGATGATGTTTT
CACTACCGGAAATACGCTTTCTACGATTGCATGGGAAATCCTACAAAAAGGTAATAAGGTGAGCGTGCTCGTTATGGCAA
TGGATGAATGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

52.995

100

0.532