Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   K0036_RS06005 Genome accession   NZ_CP080442
Coordinates   1253856..1255670 (+) Length   604 a.a.
NCBI ID   WP_220430952.1    Uniprot ID   -
Organism   [Clostridium] scindens strain Q4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1248856..1260670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0036_RS05980 (K0036_05980) - 1249365..1249850 (+) 486 WP_220430949.1 HD domain-containing protein -
  K0036_RS05985 (K0036_05985) - 1249881..1250333 (+) 453 WP_173692925.1 GNAT family N-acetyltransferase -
  K0036_RS05990 (K0036_05990) dtd 1250334..1250780 (+) 447 WP_220430950.1 D-aminoacyl-tRNA deacylase -
  K0036_RS05995 (K0036_05995) - 1250984..1251487 (+) 504 WP_025644416.1 MarR family winged helix-turn-helix transcriptional regulator -
  K0036_RS06000 (K0036_06000) - 1251509..1253854 (+) 2346 WP_220430951.1 ABC transporter ATP-binding protein -
  K0036_RS06005 (K0036_06005) rcrQ 1253856..1255670 (+) 1815 WP_220430952.1 ABC transporter ATP-binding protein Regulator
  K0036_RS06010 (K0036_06010) - 1255683..1256294 (+) 612 WP_173692929.1 HD domain-containing protein -
  K0036_RS06015 (K0036_06015) - 1256369..1256626 (-) 258 WP_025644413.1 spore coat protein -
  K0036_RS06020 (K0036_06020) - 1256642..1256824 (-) 183 WP_004607016.1 hypothetical protein -
  K0036_RS06025 (K0036_06025) - 1256859..1257602 (-) 744 WP_220430953.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  K0036_RS06030 (K0036_06030) - 1257706..1258671 (+) 966 WP_220430954.1 dipeptidase -
  K0036_RS06035 (K0036_06035) - 1258741..1259967 (-) 1227 WP_173692932.1 argininosuccinate synthase -
  K0036_RS06040 (K0036_06040) - 1260269..1260607 (+) 339 WP_025644407.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67219.06 Da        Isoelectric Point: 7.9873

>NTDB_id=592885 K0036_RS06005 WP_220430952.1 1253856..1255670(+) (rcrQ) [[Clostridium] scindens strain Q4]
MPRRGPGHGPMPGEKAKDFKGTMKKLMGYMGKYKIALLFVVIFAIGSTIFNIVGPKILGKATTEIFTGLVGKISGGSGID
FTKIGRILATLLCLYLCSALFSFIQGYIMTGVSQKLTYRMRREISEKISRLPMNYFDKMTHGEILSRITNDVDTLSMSLN
QSATQVITSVTTIIGVLIMMLSISPLMTVIALLILPLSMGLISVIVKRSQKFFKSQQRYLGHVNGQVEEVYGGHSIVKAF
NKEKDVIAAFDRDNEILYQSAWKSQFLSGMMMPIMQFVGNLGYVAVVILGGYLAIKKTIEVGDIQSFIQYVRSFTQPIQQ
VAQVANMLQSTAAASERVFEFLEEPEEDQTVPDAVALEGLEGRVEFDHVHFGYNPDHIIINDFSAKVEPGQKIAIVGPTG
AGKTTMVKLLMRFYDVNSGAIKVDGHDIRDFNRSELRQMFGMVLQDTWLFKGSIEDNIRYGKLDATHEEVVEAAKAAHVH
RFVQTLPGGYRMELNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVRIQKAMDNLMRGRTSFIIAHRLS
TIRDADLILVMKDGDIVEQGTHEELLARNGFYADLYNSQFERSA

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=592885 K0036_RS06005 WP_220430952.1 1253856..1255670(+) (rcrQ) [[Clostridium] scindens strain Q4]
ATGCCAAGAAGAGGTCCGGGACATGGTCCGATGCCTGGAGAGAAGGCAAAGGACTTTAAAGGCACTATGAAAAAACTGAT
GGGCTATATGGGGAAATATAAGATTGCCCTGCTCTTTGTGGTCATATTTGCCATCGGCAGTACCATTTTCAATATCGTAG
GCCCTAAGATTCTTGGAAAGGCCACGACAGAAATATTTACCGGCCTGGTAGGCAAGATATCCGGGGGAAGCGGAATTGAT
TTCACAAAGATCGGAAGAATTCTGGCGACATTGCTCTGCCTGTACTTATGCAGCGCCTTGTTCTCGTTTATCCAGGGATA
CATCATGACGGGCGTATCCCAGAAACTGACCTACCGGATGAGAAGAGAGATCTCCGAGAAGATCAGCCGGCTGCCAATGA
ACTATTTTGATAAGATGACCCACGGAGAGATCCTGTCACGCATCACCAATGACGTGGATACCCTGAGCATGAGCTTGAAC
CAGAGCGCGACACAGGTAATCACCTCGGTGACGACGATCATCGGAGTGCTGATCATGATGCTCAGCATCAGCCCGCTGAT
GACGGTGATCGCCCTGTTGATCCTTCCGCTGTCTATGGGGCTGATCTCTGTGATCGTCAAGCGCTCCCAGAAGTTCTTCA
AAAGCCAGCAGAGGTACCTGGGCCATGTCAATGGGCAGGTGGAAGAAGTGTACGGCGGACATAGCATCGTAAAGGCATTC
AATAAGGAGAAAGACGTGATCGCGGCATTTGACCGGGACAATGAGATCCTCTACCAGTCTGCATGGAAGTCCCAGTTCCT
CTCAGGAATGATGATGCCTATCATGCAGTTTGTTGGAAATCTTGGCTATGTGGCTGTAGTCATTCTTGGTGGCTACCTCG
CGATCAAGAAGACGATAGAAGTAGGCGATATCCAGTCATTTATCCAATACGTAAGAAGTTTTACCCAGCCGATCCAGCAG
GTAGCGCAGGTGGCCAACATGCTTCAGTCCACGGCAGCAGCTTCCGAGCGCGTGTTCGAGTTCCTGGAAGAGCCGGAAGA
AGACCAGACGGTGCCGGATGCAGTGGCTTTGGAAGGCCTGGAAGGGCGTGTGGAATTTGACCATGTGCATTTCGGATATA
ATCCGGATCATATCATTATCAATGATTTTAGCGCCAAGGTAGAGCCTGGGCAGAAGATTGCCATCGTCGGTCCTACCGGA
GCCGGCAAGACCACCATGGTCAAGCTGCTGATGCGGTTCTATGACGTCAACAGCGGCGCCATCAAGGTAGACGGCCATGA
TATCCGTGACTTTAACCGCAGCGAGCTGCGCCAGATGTTCGGCATGGTACTGCAGGATACCTGGCTGTTTAAGGGGAGCA
TTGAAGACAATATCCGCTATGGCAAGCTGGACGCTACCCATGAAGAGGTGGTCGAGGCTGCCAAGGCTGCCCATGTACAC
CGTTTTGTACAGACGCTGCCGGGAGGCTACCGAATGGAACTGAACGAAGAGGCAAGCAATGTGTCCCAGGGACAGAAGCA
GCTTCTGACTATTGCCAGGGCAATTCTGGCGGATCCGAAGATTCTGATCCTTGATGAGGCAACCAGTTCCGTAGATACCC
GTACGGAAGTCCGGATTCAGAAGGCGATGGATAATCTGATGCGTGGCAGGACCAGTTTCATTATTGCACACCGCCTCTCA
ACCATCCGCGACGCAGACCTGATCCTTGTCATGAAGGACGGAGATATCGTCGAGCAGGGTACCCATGAAGAACTGCTGGC
AAGAAACGGCTTCTATGCGGATCTTTATAACTCTCAGTTTGAAAGAAGCGCATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-317)

ABC transporter (ABC_tran)

(381-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.775

96.192

0.488