Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   M2I96_RS25405 Genome accession   NZ_CP096956
Coordinates   5409535..5409960 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain NY11173     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5404535..5414960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2I96_RS25390 (M2I96_25310) pilX 5405099..5405686 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  M2I96_RS25395 (M2I96_25315) pilY1 5405698..5409189 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -
  M2I96_RS25400 (M2I96_25320) pilY2 5409191..5409538 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  M2I96_RS25405 (M2I96_25325) comF 5409535..5409960 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  M2I96_RS25410 (M2I96_25330) ispH 5410007..5410951 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  M2I96_RS25415 (M2I96_25335) fkpB 5411037..5411477 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  M2I96_RS25420 (M2I96_25340) lspA 5411470..5411979 (-) 510 WP_003110420.1 signal peptidase II -
  M2I96_RS25425 (M2I96_25345) ileS 5411972..5414803 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=592730 M2I96_RS25405 WP_003094721.1 5409535..5409960(+) (comF) [Pseudomonas aeruginosa strain NY11173]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=592730 M2I96_RS25405 WP_003094721.1 5409535..5409960(+) (comF) [Pseudomonas aeruginosa strain NY11173]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383