Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   M2I94_RS26575 Genome accession   NZ_CP096950
Coordinates   5605329..5605754 (+) Length   141 a.a.
NCBI ID   WP_283859379.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY5532     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5600329..5610754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2I94_RS26560 (M2I94_26465) pilX 5600893..5601480 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  M2I94_RS26565 (M2I94_26470) pilY1 5601492..5604983 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -
  M2I94_RS26570 (M2I94_26475) pilY2 5604985..5605332 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  M2I94_RS26575 (M2I94_26480) comF 5605329..5605754 (+) 426 WP_283859379.1 type 4a pilus minor pilin PilE Machinery gene
  M2I94_RS26580 (M2I94_26485) ispH 5605801..5606745 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  M2I94_RS26585 (M2I94_26490) fkpB 5606831..5607271 (-) 441 WP_003161775.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  M2I94_RS26590 (M2I94_26495) lspA 5607264..5607773 (-) 510 WP_003102615.1 signal peptidase II -
  M2I94_RS26595 (M2I94_26500) ileS 5607766..5610597 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15291.36 Da        Isoelectric Point: 10.0198

>NTDB_id=592528 M2I94_RS26575 WP_283859379.1 5605329..5605754(+) (comF) [Pseudomonas aeruginosa strain NY5532]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLLLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=592528 M2I94_RS26575 WP_283859379.1 5605329..5605754(+) (comF) [Pseudomonas aeruginosa strain NY5532]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGCTCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383