Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   K6J54_RS05650 Genome accession   NZ_AP018766
Coordinates   1157649..1158989 (+) Length   446 a.a.
NCBI ID   WP_105876646.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-3 isolate 13H41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1152649..1163989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J54_RS05635 (CHBNII3_10620) lrp 1153707..1154186 (+) 480 WP_005653255.1 leucine-responsive transcriptional regulator Lrp -
  K6J54_RS05640 (CHBNII3_10630) - 1154188..1156953 (+) 2766 WP_105876645.1 DNA translocase FtsK -
  K6J54_RS05645 (CHBNII3_10640) lolA 1156971..1157588 (+) 618 WP_005687700.1 outer membrane lipoprotein chaperone LolA -
  K6J54_RS05650 (CHBNII3_10650) rarA 1157649..1158989 (+) 1341 WP_105876646.1 replication-associated recombination protein A Machinery gene
  K6J54_RS05655 (CHBNII3_10660) aroA 1159071..1160369 (-) 1299 WP_042593979.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  K6J54_RS05660 (CHBNII3_10670) purU 1160369..1161205 (-) 837 WP_005661478.1 formyltetrahydrofolate deformylase -
  K6J54_RS05665 (CHBNII3_10680) - 1161275..1161679 (-) 405 WP_005647241.1 H-NS family nucleoid-associated regulatory protein -
  K6J54_RS05670 (CHBNII3_10690) - 1162121..1163641 (+) 1521 WP_005690076.1 Na+/H+ antiporter NhaC family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50235.13 Da        Isoelectric Point: 6.3312

>NTDB_id=59245 K6J54_RS05650 WP_105876646.1 1157649..1158989(+) (rarA) [Haemophilus influenzae strain CHBN-II-3 isolate 13H41]
MSNLNFDFVENDFRPLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVER
ISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGSVIFIGATTENPSFELNNALLSRARVY
VLKSLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADEMENGKKIDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSAVKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=59245 K6J54_RS05650 WP_105876646.1 1157649..1158989(+) (rarA) [Haemophilus influenzae strain CHBN-II-3 isolate 13H41]
ATGTCTAACCTCAATTTTGATTTTGTCGAAAATGATTTTCGCCCACTGGCGGCCAAGATGCGTCCAACGAGTCTAGAACA
ATATTTTGGGCAAAGCCATTTAATTGGCGAGGGCAAGCCACTGCGAAAAGCTATCCAAGCTGGCCATATTCATTCTATGA
TTTTGTGGGGCCCGCCAGGTACGGGGAAAACAACCCTTGCAGAAATCATAGCACAACGTATTAATGCAGAAGTAGAGCGA
ATTTCTGCGGTGACGAGTGGTATCAAAGAAATTCGTGAAGCGATTGATCGTGCAAAACAAAATCGTCTTGCGGATCGTAA
AACTATCTTATTTGTGGATGAAGTCCATCGTTTTAATAAAAGCCAGCAAGATGCATTTTTACCGCACATTGAAGACGGAA
GCGTTATTTTTATTGGGGCGACAACAGAAAATCCCTCTTTTGAGCTAAATAATGCGTTGCTTTCTCGTGCCCGAGTGTAT
GTGCTGAAATCACTCACAACGGCTGAAATTGAACAAGTTTTGCAGCAAGCTGTAGAAGATCCTGAACGAGGATTGGGTAA
AGAGCGGTTAATTTTAGAAGAGAATTTACTGCAAGTGCTTGCCGAATATGTTAATGGGGATGCACGATTAGCCTTGAATT
GCCTCGAATTAATGGTGGATATGGCAGATGAAATGGAAAATGGAAAGAAAATTGACCGCACTTTATTAAAAGAAGTCTTA
GGCGAACGTCAAGCGAGATTTGATAAACAAGGTGATCGTTTCTATGATTTAATTTCTGCGCTACATAAATCTGTTCGAGG
TTCTGCTCCAGACGCTGCACTGTATTGGTATGCAAGAATTTTAACAGCGGGTGGAGACCCTTTATATGTTGCGCGCCGAT
TACTTGCCATTGCTTCAGAAGATGTGGGAAATGCAGATCCTCGTGCTATGCAAGTCGCATTGGCTGCTTGGGATTGCTTT
ACTCGAGTGGGGGCTTATGAAGGGGAGCGAGCCATCGCCCAAGCCATTATTTATCTTGCAGTAGCCCCAAAAAGTAATGC
GGTTTATACCGCATTTAACACTGCGAAACAGCAAGCGAAAGATTTGCCAGATTACGATGTTCCACCACATTTACGCAATG
CGCCGACTAATTTAATGAAAGAACTTGGCTATGGGGCTGAATATCGTTATGCCCACGATGAACCTAACGCTTATGCGGCA
GGCGAAAATTATTTCCCACCTGAATTAAAAGATACTCAATATTATTTTCCGACAAATAGAGGTATGGAAATTCAGATTAA
GGAAAAACTAGAACGGTTACGTGAGCAAGATAAAAGTGCGGTGAAAAAACGGTATAAATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(188-266)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

ATPase family associated with various cellular activities (AAA) (AAA)

(53-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.243

94.843

0.372