Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   M2I92_RS29300 Genome accession   NZ_CP096945
Coordinates   6127437..6127961 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain NY5525     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6122437..6132961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2I92_RS29285 (M2I92_29205) aroB 6123553..6124659 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  M2I92_RS29290 (M2I92_29210) aroK 6124709..6125227 (-) 519 WP_003095833.1 shikimate kinase AroK -
  M2I92_RS29295 (M2I92_29215) pilQ 6125239..6127383 (-) 2145 WP_034039637.1 type 4a pilus secretin PilQ Machinery gene
  M2I92_RS29300 (M2I92_29220) comL/pilP 6127437..6127961 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  M2I92_RS29305 (M2I92_29225) pilO 6127958..6128581 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  M2I92_RS29310 (M2I92_29230) pilN 6128578..6129174 (-) 597 WP_031671448.1 type 4a pilus biogenesis protein PilN Machinery gene
  M2I92_RS29315 (M2I92_29235) pilM 6129174..6130238 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  M2I92_RS29320 (M2I92_29240) - 6130423..6132894 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=592329 M2I92_RS29300 WP_003095836.1 6127437..6127961(-) (comL/pilP) [Pseudomonas aeruginosa strain NY5525]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=592329 M2I92_RS29300 WP_003095836.1 6127437..6127961(-) (comL/pilP) [Pseudomonas aeruginosa strain NY5525]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
TCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362