Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   M2I88_RS26785 Genome accession   NZ_CP096941
Coordinates   5697782..5698207 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain NY5523     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5692782..5703207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2I88_RS26770 (M2I88_26705) pilX 5693346..5693933 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  M2I88_RS26775 (M2I88_26710) pilY1 5693945..5697436 (+) 3492 WP_003094704.1 type 4a pilus biogenesis protein PilY1 -
  M2I88_RS26780 (M2I88_26715) pilY2 5697438..5697785 (+) 348 WP_003094713.1 type 4a fimbrial biogenesis protein PilY2 -
  M2I88_RS26785 (M2I88_26720) comF 5697782..5698207 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  M2I88_RS26790 (M2I88_26725) ispH 5698254..5699198 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  M2I88_RS26795 (M2I88_26730) fkpB 5699284..5699724 (-) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  M2I88_RS26800 (M2I88_26735) lspA 5699717..5700226 (-) 510 WP_003094728.1 signal peptidase II -
  M2I88_RS26805 (M2I88_26740) ileS 5700219..5703050 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=592123 M2I88_RS26785 WP_003094721.1 5697782..5698207(+) (comF) [Pseudomonas aeruginosa strain NY5523]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=592123 M2I88_RS26785 WP_003094721.1 5697782..5698207(+) (comF) [Pseudomonas aeruginosa strain NY5523]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383