Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   M2I83_RS02665 Genome accession   NZ_CP096929
Coordinates   588601..589326 (-) Length   241 a.a.
NCBI ID   WP_031629267.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY5507     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 583601..594326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2I83_RS02640 (M2I83_02640) - 584074..584589 (+) 516 WP_115288947.1 glycine cleavage system protein R -
  M2I83_RS02645 (M2I83_02645) rarD 585278..586174 (-) 897 WP_003103301.1 EamA family transporter RarD -
  M2I83_RS02650 (M2I83_02650) - 586377..587351 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  M2I83_RS02655 (M2I83_02655) - 587413..588171 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  M2I83_RS02660 (M2I83_02660) - 588239..588559 (-) 321 WP_003117926.1 YfiM family lipoprotein -
  M2I83_RS02665 (M2I83_02665) comF 588601..589326 (-) 726 WP_031629267.1 ComF family protein Machinery gene
  M2I83_RS02670 (M2I83_02670) - 589465..589758 (-) 294 WP_003113255.1 hypothetical protein -
  M2I83_RS02675 (M2I83_02675) - 589812..590738 (-) 927 WP_003121790.1 LysR family transcriptional regulator -
  M2I83_RS02680 (M2I83_02680) - 590856..591614 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  M2I83_RS02685 (M2I83_02685) - 591691..591939 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  M2I83_RS02690 (M2I83_02690) - 591950..593326 (+) 1377 WP_003113254.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  M2I83_RS02695 (M2I83_02695) - 593328..594206 (+) 879 WP_023081616.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27060.54 Da        Isoelectric Point: 11.0325

>NTDB_id=591653 M2I83_RS02665 WP_031629267.1 588601..589326(-) (comF) [Pseudomonas aeruginosa strain NY5507]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAEQLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=591653 M2I83_RS02665 WP_031629267.1 588601..589326(-) (comF) [Pseudomonas aeruginosa strain NY5507]
ATGTCGTTCCCGCTTCGTCCTCTCACTCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCACTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCAACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382