Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   M2J77_RS29370 Genome accession   NZ_CP096909
Coordinates   6263657..6264181 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain NY8688     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6258657..6269181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2J77_RS29355 (M2J77_29285) aroB 6259773..6260879 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  M2J77_RS29360 (M2J77_29290) aroK 6260929..6261447 (-) 519 WP_003095833.1 shikimate kinase AroK -
  M2J77_RS29365 (M2J77_29295) pilQ 6261459..6263603 (-) 2145 WP_003123619.1 type 4a pilus secretin PilQ Machinery gene
  M2J77_RS29370 (M2J77_29300) comL/pilP 6263657..6264181 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  M2J77_RS29375 (M2J77_29305) pilO 6264178..6264801 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  M2J77_RS29380 (M2J77_29310) pilN 6264798..6265394 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  M2J77_RS29385 (M2J77_29315) pilM 6265394..6266458 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  M2J77_RS29390 (M2J77_29320) - 6266643..6269114 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=591328 M2J77_RS29370 WP_003095836.1 6263657..6264181(-) (comL/pilP) [Pseudomonas aeruginosa strain NY8688]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=591328 M2J77_RS29370 WP_003095836.1 6263657..6264181(-) (comL/pilP) [Pseudomonas aeruginosa strain NY8688]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362