Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   MUK60_RS28605 Genome accession   NZ_CP096907
Coordinates   6554505..6556238 (-) Length   577 a.a.
NCBI ID   WP_248779280.1    Uniprot ID   -
Organism   Streptomyces sp. LRE541     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6549505..6561238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUK60_RS28595 (MUK60_28595) - 6551030..6552346 (+) 1317 WP_189775851.1 RNA polymerase sigma factor -
  MUK60_RS28600 (MUK60_28600) rcrQ 6552577..6554505 (-) 1929 WP_248779279.1 ABC transporter ATP-binding protein Regulator
  MUK60_RS28605 (MUK60_28605) rcrP 6554505..6556238 (-) 1734 WP_248779280.1 ABC transporter ATP-binding protein Regulator
  MUK60_RS28610 (MUK60_28610) - 6556453..6557907 (-) 1455 WP_189775848.1 FGGY family carbohydrate kinase -
  MUK60_RS28615 (MUK60_28615) - 6558080..6558388 (-) 309 WP_189775847.1 YtxH domain-containing protein -
  MUK60_RS28635 (MUK60_28635) - 6559475..6561091 (-) 1617 WP_248779281.1 GAF domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62595.89 Da        Isoelectric Point: 6.5128

>NTDB_id=591222 MUK60_RS28605 WP_248779280.1 6554505..6556238(-) (rcrP) [Streptomyces sp. LRE541]
MLIRLLRTYLTPYKKPIGLLVLLQFLQTCATLFLPTLNADIIDNGVVKGDTGYILNFGALMIGISLAQVVCNIGAVYYGA
RTASAVGRDLRAAVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSGV
LLAVVPVLGISVSLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDAYEEERFRKANTDLTEVSLGTGRMLAL
MFPIVMTVVNVSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETSSSVVP
PKAPVLELRRHGHLELRGAGFRYPGAEEPVLKAVDLVALPGETTAVIGSTGSGKSTLLGLVPRLFDATDGQVLVDGVDVR
TVEPRLLARTVSLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEALENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=591222 MUK60_RS28605 WP_248779280.1 6554505..6556238(-) (rcrP) [Streptomyces sp. LRE541]
GTGCTCATAAGACTTCTGCGTACCTATCTCACGCCCTACAAGAAACCCATCGGCCTGCTCGTCCTGCTCCAGTTCCTGCA
GACCTGCGCCACGCTCTTCCTGCCGACCCTGAACGCCGACATCATCGACAACGGTGTCGTGAAGGGCGACACGGGATACA
TCCTGAACTTCGGCGCCCTGATGATCGGCATCTCGCTGGCGCAGGTCGTCTGCAACATCGGCGCCGTCTACTACGGCGCC
CGTACGGCCTCGGCGGTCGGCCGGGACCTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGTGAGCTGGG
CCAGTTCGGGGCGCCCTCCCTGATCACCCGTACGACGAACGACGTCCAGCAGGTGCAGATGCTGGCCCTGATGACGTTCA
CGCTGCTGGTGTCCGCGCCGATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGCCTGGACGTACCCCTGTCCGGGGTG
CTGCTCGCCGTCGTGCCGGTGCTCGGGATCTCGGTCAGTCTCATCGTGCGGCGGCTGCGGCCCCTGTTCCGGACGATGCA
GGTGCGCCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGTAACCGCGTCATCCGTGCCTTCGTGCGCGACG
CGTACGAGGAGGAGCGTTTCCGGAAGGCCAACACCGACCTCACCGAGGTGTCGCTGGGGACCGGGCGGATGCTGGCGCTG
ATGTTCCCCATCGTCATGACGGTGGTGAACGTCTCGTCGATCGCCGTCGTGTGGTTCGGTGCCCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCTCCAGCAGTGTGGTCCCG
CCGAAGGCTCCCGTCCTGGAGCTGCGGCGGCACGGTCATCTGGAGCTGCGCGGGGCGGGCTTCCGCTACCCGGGCGCCGA
GGAGCCGGTCCTGAAGGCCGTCGACCTGGTGGCGCTGCCCGGCGAGACGACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCGACCCTCCTCGGTCTCGTCCCCCGGCTGTTCGACGCCACGGACGGGCAGGTGCTGGTCGACGGCGTCGACGTCCGG
ACGGTCGAGCCGCGGCTGCTGGCGCGCACGGTGAGCCTCGTACCGCAGAAGCCGTATCTGTTCGCGGGGACGGTGGCCAC
CAACCTGCGGTACGGGAATCCGGACGCGACGGACGAGGAGTTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGAGGCGCTTGAGAACGGGCTCGACTCGCCGATCGCACAGGGCGGCACGAACGTGTCGGGCGGTCAGCGGCAGCGGCTC
GCCATCGCCCGGACCCTCGTACAGCGGCCCGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACGGA
CGCGGCGCTGCGTGCGGCGCTCGCGCGGGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GCGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGGACAGGACGCCATCACGAGCTGATGGCGGACAAC
GAGACCTATCGGGAGATCGTGCTCTCGCAGCTGACGGAAGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.415

100

0.397