Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   K6J65_RS06455 Genome accession   NZ_AP018764
Coordinates   1274499..1275839 (+) Length   446 a.a.
NCBI ID   WP_105892719.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-1 isolate 13H34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1269499..1280839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J65_RS06440 (CHBNII1_12250) lrp 1270554..1271033 (+) 480 WP_005664572.1 leucine-responsive transcriptional regulator Lrp -
  K6J65_RS06445 (CHBNII1_12260) - 1271035..1273803 (+) 2769 WP_058222225.1 DNA translocase FtsK -
  K6J65_RS06450 (CHBNII1_12270) lolA 1273821..1274438 (+) 618 WP_042611209.1 outer membrane lipoprotein chaperone LolA -
  K6J65_RS06455 (CHBNII1_12280) rarA 1274499..1275839 (+) 1341 WP_105892719.1 replication-associated recombination protein A Machinery gene
  K6J65_RS06460 (CHBNII1_12290) aroA 1275920..1277218 (-) 1299 WP_005656927.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  K6J65_RS06465 (CHBNII1_12300) purU 1277218..1278054 (-) 837 WP_005656925.1 formyltetrahydrofolate deformylase -
  K6J65_RS06470 (CHBNII1_12310) - 1278124..1278528 (-) 405 WP_005656923.1 H-NS family nucleoid-associated regulatory protein -
  K6J65_RS06475 (CHBNII1_12320) - 1278971..1280491 (+) 1521 WP_005661480.1 Na+/H+ antiporter NhaC family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50249.10 Da        Isoelectric Point: 6.3312

>NTDB_id=59122 K6J65_RS06455 WP_105892719.1 1274499..1275839(+) (rarA) [Haemophilus influenzae strain CHBN-II-1 isolate 13H34]
MSNLNFDFAENDFRPLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVER
ISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVY
VLKSLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGKKIDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLVIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYSAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSAVKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=59122 K6J65_RS06455 WP_105892719.1 1274499..1275839(+) (rarA) [Haemophilus influenzae strain CHBN-II-1 isolate 13H34]
ATGTCTAACCTCAATTTTGATTTTGCCGAAAATGATTTTCGCCCACTGGCGGCCAAGATGCGTCCAACGAGTCTAGAACA
ATATTTTGGGCAAAGCCATTTAATTGGCGAGGGCAAGCCACTGCGAAAAGCTATCCAAGCTGGCCATATTCATTCAATGA
TTTTGTGGGGCCCACCAGGTACGGGGAAAACAACCCTTGCAGAAATCATAGCACAACGTATTAATGCGGAAGTAGAGCGA
ATTTCTGCGGTGACGAGTGGCATCAAAGAAATTCGTGAAGCGATTGATCGTGCAAAACAAAATCGTCTTGCGGATCGTAA
AACTATCTTATTTGTGGATGAAGTCCATCGTTTTAATAAAAGCCAGCAAGATGCATTTTTACCACACATTGAAGACGGAA
CCGTTATTTTCATTGGGGCGACAACAGAAAATCCCTCTTTTGAGCTAAATAATGCATTGCTTTCTCGTGCCCGCGTGTAT
GTGCTGAAATCACTCACAACGGCTGAAATTGAACAAGTTTTGCAGCAAGCTGTAGAAGATCCTGAACGAGGATTGGGTAA
AGAGCGGCTAATTTTAGAAGAGAATTTACTGCAAGTGCTTGCCGAATATGTTAATGGGGATGCTCGATTAGCCTTGAATT
GTCTCGAATTAATGGTGGATATGGCAGATGAAACTGAAAATGGAAAGAAAATTGACCGCACTTTATTAAAAGAAGTCTTA
GGTGAACGCCAAGCGAGATTTGATAAACAAGGCGATCGTTTCTATGATTTAATTTCTGCGCTACATAAATCTGTCCGAGG
TTCTGCTCCAGATGCTGCGCTGTATTGGTATGCAAGAATTTTAACGGCAGGTGGCGATCCTCTATATGTCGCGCGTCGAT
TACTTGTCATTGCTTCAGAAGATGTGGGAAATGCAGATCCTCGTGCTATGCAAGTTGCATTGGCTGCTTGGGATTGCTTT
ACTCGAGTGGGGGCTTATGAAGGGGAGCGTGCCATTGCCCAAGCCATCATTTATCTTGCGGTTGCTCCAAAAAGTAATGC
AGTTTATACGGCGTTTAATACTGCAAAACAGCAAGCGAAAGATTTACCCGATTACGATGTTCCCCCACATTTACGCAATG
CGCCGACTAATTTAATGAAAGAGCTTGGCTATAGTGCTGAATATCGTTATGCCCACGATGAACCTAACGCTTATGCGGCA
GGCGAAAATTATTTCCCACCTGAATTAAAAGACACTCAATATTATTTTCCGACAAATAGAGGTATGGAAATTCAGATTAA
GGAAAAACTAGAACGGTTACGTGAGCAAGATAAAAGTGCGGTGAAAAAACGGTATAAATAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(53-159)

AAA C-terminal domain (AAA_assoc_2)

(188-266)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.243

94.843

0.372