Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KZR01_RS13945 Genome accession   NZ_CP080098
Coordinates   792787..793512 (-) Length   241 a.a.
NCBI ID   WP_061065531.1    Uniprot ID   -
Organism   Vibrio harveyi strain     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 787787..798512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZR01_RS13920 - 788944..789435 (+) 492 WP_005448492.1 type II secretion system protein M -
  KZR01_RS13925 - 789437..790198 (+) 762 WP_005448490.1 type II secretion system protein N -
  KZR01_RS13930 cysQ 790488..791315 (-) 828 WP_005448488.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  KZR01_RS13935 nudE 791363..791929 (-) 567 WP_009698975.1 ADP compounds hydrolase NudE -
  KZR01_RS13940 nfuA 792105..792689 (-) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  KZR01_RS13945 comF 792787..793512 (-) 726 WP_061065531.1 ComF family protein Machinery gene
  KZR01_RS13950 bioH 793597..794361 (+) 765 WP_050925837.1 pimeloyl-ACP methyl ester esterase BioH -
  KZR01_RS13955 - 794498..794962 (+) 465 WP_009700714.1 hypothetical protein -
  KZR01_RS13960 - 795066..797387 (-) 2322 WP_017189965.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27740.82 Da        Isoelectric Point: 8.4332

>NTDB_id=591074 KZR01_RS13945 WP_061065531.1 792787..793512(-) (comF) [Vibrio harveyi strain]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSTLTQLLAERIEQPAPVITSVPVHWQRYIKRGFNQSHILTKHLARHLDVRYES
KIFKRVKNAQSQRGNKKASREQNLQGAFALQGEVDFSHVAIMDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=591074 KZR01_RS13945 WP_061065531.1 792787..793512(-) (comF) [Vibrio harveyi strain]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACACCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTACGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCCCCCGTCATCACCAGCGTGCCCGTTCACTGGCAGC
GCTACATAAAACGAGGCTTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGATATTTAAACGTGTCAAAAACGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTATGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

91.701

100

0.917
  comF Vibrio cholerae strain A1552

47.059

98.755

0.465