Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   M1V28_RS24895 Genome accession   NZ_CP096822
Coordinates   5387458..5387883 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain NY8709     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5382458..5392883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1V28_RS24880 (M1V28_24840) pilX 5383022..5383609 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  M1V28_RS24885 (M1V28_24845) pilY1 5383621..5387112 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -
  M1V28_RS24890 (M1V28_24850) pilY2 5387114..5387461 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  M1V28_RS24895 (M1V28_24855) comF 5387458..5387883 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  M1V28_RS24900 (M1V28_24860) ispH 5387930..5388874 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  M1V28_RS24905 (M1V28_24865) fkpB 5388960..5389400 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  M1V28_RS24910 (M1V28_24870) lspA 5389393..5389902 (-) 510 WP_003094728.1 signal peptidase II -
  M1V28_RS24915 (M1V28_24875) ileS 5389895..5392726 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=590816 M1V28_RS24895 WP_003094721.1 5387458..5387883(+) (comF) [Pseudomonas aeruginosa strain NY8709]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=590816 M1V28_RS24895 WP_003094721.1 5387458..5387883(+) (comF) [Pseudomonas aeruginosa strain NY8709]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383