Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   KZP24_RS02260 Genome accession   NZ_CP080028
Coordinates   426579..428978 (-) Length   799 a.a.
NCBI ID   WP_071975006.1    Uniprot ID   -
Organism   Heyndrickxia oleronia strain DSM 9356     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 421579..433978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZP24_RS02235 - 423423..424499 (-) 1077 WP_078110972.1 AI-2E family transporter -
  KZP24_RS02240 - 424593..424727 (-) 135 WP_139254802.1 YrzQ family protein -
  KZP24_RS02245 - 424750..424938 (-) 189 WP_058002086.1 hypothetical protein -
  KZP24_RS02250 - 424910..425428 (-) 519 WP_058002085.1 PRC-barrel domain-containing protein -
  KZP24_RS02255 - 425739..426458 (-) 720 WP_209391894.1 YebC/PmpR family DNA-binding transcriptional regulator -
  KZP24_RS02260 recD2 426579..428978 (-) 2400 WP_071975006.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KZP24_RS02265 - 429004..429674 (-) 671 Protein_452 tetratricopeptide repeat protein -
  KZP24_RS02270 mnmA 430060..431175 (-) 1116 WP_058002081.1 tRNA 2-thiouridine(34) synthase MnmA -
  KZP24_RS02275 - 431185..432333 (-) 1149 WP_078110821.1 cysteine desulfurase family protein -
  KZP24_RS02280 cymR 432558..432977 (-) 420 WP_058002079.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 799 a.a.        Molecular weight: 91079.29 Da        Isoelectric Point: 5.0170

>NTDB_id=590779 KZP24_RS02260 WP_071975006.1 426579..428978(-) (recD2) [Heyndrickxia oleronia strain DSM 9356]
MLEQQNSLDLFANDEKYIRGRHLVTIFHNEQNLYSVIRIRVDETNLEYNEKEAVITGHFPKIHEQETYIFYGDMQEHPKF
GPQFQAKHFKKEIPQTKQGIIAYLSSEIFSGIGKKTAERIVEELGENAISKILDQPTILDNIPKLPSEKAKSLYDKLIEH
QGLERVMIGLNQFGFGPQISMKIYQVYKEQSLEMIQKNPFQLVEDIEGIGFGRADEIGKQLGLVGNHPDRIKAACMYTLE
QECLQNGHVYMDSEDLLPKVKKLLEESQPFTIEYTDISAEIIKLAEEEKLIGENQKLYIPSLYFSEKGIVTNVQRILQQE
EYQDQFPESEFLLALGELEERIGVQYAPSQKEAIQKALMSPMMILTGGPGTGKTTVIKGIVELYAELNGCSLDPKKYNKE
NPFPIVLTAPTGRAAKRMAESTGLPAMTIHRLLGMTGQEDLDTDDEKKVDGKLVIVDEMSMVDTWLAHQLLKALPDHIQV
IFVGDEDQLPSVGPGQVLKDLLRSKVIPTVQLTDIYRQENGSSIIELAHEIKNGHIPEDVTKQQKDRSFIRCTSGQIPEV
IEKVVSSAKRKGYTQKDVQVLAPMYRGPAGIDRLNVLLQEIFNPNDTGNRKEISFGESKYRIGDKVLQLVNQPEKHVFNG
DIGEIISIFYAKENTEKQDLILVSFDGIEVTYSRQDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRKLLYTAI
TRSKQSLIICGEEEAFRIGIEREDDQLRKTSLYDKLCILEKINPQEENKGEIFIFNEENMFKVDPMIGMENITPYDFLS

Nucleotide


Download         Length: 2400 bp        

>NTDB_id=590779 KZP24_RS02260 WP_071975006.1 426579..428978(-) (recD2) [Heyndrickxia oleronia strain DSM 9356]
ATGTTGGAACAGCAAAACTCACTTGATTTATTTGCAAACGATGAAAAATATATAAGGGGACGTCATCTCGTTACCATTTT
TCATAATGAACAAAATTTATACTCTGTCATAAGGATTAGGGTGGACGAAACGAATCTTGAATATAACGAAAAAGAAGCGG
TAATTACAGGTCATTTTCCAAAAATACATGAGCAGGAAACGTATATTTTTTATGGAGATATGCAAGAGCATCCAAAGTTT
GGACCTCAATTTCAAGCTAAACATTTTAAAAAAGAAATACCGCAAACGAAACAAGGTATTATTGCTTATTTATCAAGTGA
AATATTTAGTGGGATAGGTAAAAAAACAGCGGAACGGATTGTTGAGGAGCTTGGTGAAAATGCGATCAGTAAAATCCTTG
ATCAGCCAACCATACTAGATAATATCCCTAAACTACCATCTGAAAAAGCTAAAAGCTTATATGATAAATTAATTGAACAT
CAAGGCCTGGAACGTGTGATGATTGGTCTAAATCAATTTGGTTTTGGGCCACAAATATCAATGAAAATTTATCAAGTTTA
TAAAGAACAGTCATTAGAAATGATCCAAAAAAATCCCTTTCAGTTAGTTGAAGATATTGAAGGAATTGGTTTTGGCCGCG
CGGATGAAATTGGTAAACAATTAGGGTTGGTAGGCAATCATCCTGATCGGATTAAAGCAGCATGTATGTATACATTGGAG
CAAGAATGTCTTCAAAATGGTCATGTATACATGGATTCAGAGGATTTACTTCCTAAAGTTAAGAAATTATTGGAAGAGTC
TCAACCTTTTACAATCGAATATACTGATATTTCGGCTGAAATTATTAAACTAGCTGAAGAGGAAAAATTAATTGGAGAAA
ACCAAAAATTATACATCCCATCCCTCTATTTTTCAGAAAAAGGCATTGTAACAAATGTGCAACGTATACTTCAACAAGAG
GAGTATCAAGATCAATTTCCAGAATCCGAATTTTTACTGGCATTAGGGGAACTTGAGGAAAGGATTGGAGTACAATATGC
GCCATCTCAAAAAGAAGCAATCCAAAAAGCATTAATGTCTCCAATGATGATATTAACTGGGGGTCCTGGAACTGGAAAAA
CAACTGTCATAAAAGGGATTGTTGAACTTTATGCAGAACTAAATGGGTGCTCTCTCGATCCTAAAAAGTATAATAAGGAA
AACCCCTTTCCGATCGTATTGACTGCACCTACTGGAAGAGCGGCAAAAAGAATGGCGGAATCAACTGGTTTGCCGGCTAT
GACGATTCATCGTTTATTAGGGATGACGGGACAAGAGGATTTAGATACAGATGACGAGAAAAAGGTTGATGGTAAGCTTG
TAATTGTAGATGAAATGTCTATGGTTGATACTTGGTTAGCACATCAATTGCTAAAGGCTTTACCTGATCATATACAGGTT
ATATTTGTAGGGGACGAAGACCAGCTTCCTTCTGTTGGACCAGGACAAGTATTAAAAGATTTATTAAGGTCTAAGGTCAT
CCCTACTGTACAATTGACAGATATCTATCGCCAAGAAAATGGCTCATCTATCATTGAACTCGCTCATGAAATCAAGAATG
GTCATATCCCAGAGGATGTGACAAAGCAACAAAAGGATCGATCATTTATACGTTGTACCTCAGGACAAATCCCTGAAGTG
ATCGAGAAAGTCGTATCAAGTGCAAAAAGAAAAGGTTATACTCAAAAAGATGTACAAGTTCTTGCGCCAATGTATCGAGG
ACCTGCAGGGATCGATCGGTTAAATGTGTTGTTACAAGAAATTTTTAATCCTAATGATACAGGAAATCGGAAGGAAATTA
GTTTTGGTGAGAGTAAATATCGAATTGGAGACAAAGTATTACAACTTGTCAATCAACCGGAGAAACATGTCTTTAATGGT
GATATAGGTGAAATCATATCAATTTTCTATGCAAAGGAAAATACGGAAAAGCAAGACCTGATCCTAGTATCGTTTGATGG
AATTGAGGTCACTTATTCCCGCCAGGATTTTAATCAATTTACCCATGCATACTGTTGCTCTATTCACAAATCACAAGGAA
GTGAATTTCCGATCGTTATCCTTCCTGTTGTAAAAAGTTATTATCGAATGCTTAGAAGAAAGTTATTGTATACTGCAATA
ACAAGAAGTAAGCAATCCTTAATTATTTGTGGCGAAGAAGAAGCATTCCGGATTGGAATCGAAAGAGAAGATGATCAACT
AAGGAAGACAAGTCTATATGATAAATTATGTATTCTAGAAAAAATAAACCCGCAAGAAGAAAATAAAGGTGAAATATTTA
TTTTTAATGAGGAAAATATGTTCAAAGTTGATCCAATGATTGGAATGGAAAATATTACACCGTATGATTTTTTAAGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(346-554)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.902

99.875

0.608