Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   FGCSD_RS11205 Genome accession   NZ_AP018726
Coordinates   205522..205950 (+) Length   142 a.a.
NCBI ID   WP_129555185.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 200522..210950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS01135 (FGCSD_0178) - 202865..203230 (+) 366 WP_129555183.1 DUF1033 family protein -
  FGCSD_RS01140 (FGCSD_0179) comGA 203311..204252 (+) 942 WP_129555184.1 competence type IV pilus ATPase ComGA Machinery gene
  FGCSD_RS01145 (FGCSD_0180) comGB 204188..205219 (+) 1032 WP_129556365.1 competence type IV pilus assembly protein ComGB Machinery gene
  FGCSD_RS01150 (FGCSD_0181) comGC 205221..205547 (+) 327 WP_111714771.1 competence type IV pilus major pilin ComGC Machinery gene
  FGCSD_RS11205 (FGCSD_0182) comGD 205522..205950 (+) 429 WP_129555185.1 competence type IV pilus minor pilin ComGD Machinery gene
  FGCSD_RS01160 (FGCSD_0183) comGE 205907..206203 (+) 297 WP_129555186.1 competence type IV pilus minor pilin ComGE Machinery gene
  FGCSD_RS01165 (FGCSD_0184) comGF 206184..206624 (+) 441 WP_129555187.1 competence type IV pilus minor pilin ComGF Machinery gene
  FGCSD_RS01170 (FGCSD_0185) comGG 206602..206976 (+) 375 WP_129555188.1 competence type IV pilus minor pilin ComGG -
  FGCSD_RS01175 (FGCSD_0186) comGH 207039..207992 (+) 954 WP_129555189.1 class I SAM-dependent methyltransferase Machinery gene
  FGCSD_RS01180 (FGCSD_0187) - 208051..209247 (+) 1197 WP_129555190.1 acetate kinase -
  FGCSD_RS01185 (FGCSD_0188) - 209553..209760 (+) 208 Protein_180 helix-turn-helix transcriptional regulator -
  FGCSD_RS01190 (FGCSD_0189) - 209863..210543 (+) 681 WP_129555191.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16360.86 Da        Isoelectric Point: 9.7317

>NTDB_id=59072 FGCSD_RS11205 WP_129555185.1 205522..205950(+) (comGD) [Streptococcus dysgalactiae strain Kdys0611]
MKSPVLNLKAFTMLESLLTLSVTSFIVLGLSMPVTSSYRRVQEQLFFTRFEHFYRHQQKLAILEHDQRVLTISSKQMLAA
EESLTIPDSIRVKNCQQLVIDQMGGNHSLAKIIFETTDQRVTYQFYLGSGNYQKTSQSLHRS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=59072 FGCSD_RS11205 WP_129555185.1 205522..205950(+) (comGD) [Streptococcus dysgalactiae strain Kdys0611]
ATGAAAAGTCCAGTCTTAAACCTTAAAGCTTTCACAATGCTTGAAAGCTTATTAACGCTATCAGTAACAAGTTTTATTGT
CTTGGGGTTATCTATGCCTGTGACAAGTAGTTATCGAAGGGTCCAGGAACAGCTTTTTTTCACTCGTTTTGAGCACTTTT
ATCGTCACCAACAAAAGTTGGCTATTTTGGAACATGATCAACGAGTTTTGACAATTTCTTCGAAACAAATGCTAGCGGCA
GAGGAGTCGTTAACAATACCTGACTCGATAAGAGTTAAGAATTGCCAGCAATTGGTTATTGATCAAATGGGAGGAAATCA
TTCTTTAGCAAAGATAATATTCGAGACGACTGATCAACGGGTAACTTATCAATTTTATCTAGGGAGTGGAAATTATCAAA
AAACAAGTCAAAGCTTACATCGCTCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

44.961

90.845

0.408
  comGD Streptococcus mutans UA159

44.961

90.845

0.408
  comGD Streptococcus gordonii str. Challis substr. CH1

43.511

92.254

0.401
  comGD/cglD Streptococcus mitis NCTC 12261

40.288

97.887

0.394

Multiple sequence alignment