Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   KYI13_RS07985 Genome accession   NZ_CP079984
Coordinates   1514300..1516720 (-) Length   806 a.a.
NCBI ID   WP_219497472.1    Uniprot ID   -
Organism   Macrococcoides bohemicum strain 19Msa0383     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1509300..1521720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYI13_RS07965 (KYI13_07970) - 1510337..1510666 (-) 330 WP_096076290.1 DUF1292 domain-containing protein -
  KYI13_RS07970 (KYI13_07975) ruvX 1510681..1511100 (-) 420 WP_096076289.1 Holliday junction resolvase RuvX -
  KYI13_RS07975 (KYI13_07980) - 1511093..1511362 (-) 270 WP_096076288.1 IreB family regulatory phosphoprotein -
  KYI13_RS07980 (KYI13_07985) alaS 1511424..1514048 (-) 2625 WP_219497471.1 alanine--tRNA ligase -
  KYI13_RS07985 (KYI13_07990) recD2 1514300..1516720 (-) 2421 WP_219497472.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KYI13_RS07990 (KYI13_07995) - 1516723..1517382 (-) 660 WP_096076285.1 tetratricopeptide repeat protein -
  KYI13_RS07995 (KYI13_08000) mnmA 1517461..1518579 (-) 1119 WP_219497473.1 tRNA 2-thiouridine(34) synthase MnmA -
  KYI13_RS08000 (KYI13_08005) - 1518586..1519725 (-) 1140 WP_096076283.1 cysteine desulfurase family protein -
  KYI13_RS08005 (KYI13_08010) - 1520058..1521059 (+) 1002 WP_096076282.1 LLM class flavin-dependent oxidoreductase -
  KYI13_RS08010 (KYI13_08015) cymR 1521096..1521515 (-) 420 WP_096076281.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 806 a.a.        Molecular weight: 91482.13 Da        Isoelectric Point: 4.5462

>NTDB_id=590616 KYI13_RS07985 WP_219497472.1 1514300..1516720(-) (recD2) [Macrococcoides bohemicum strain 19Msa0383]
MENATLFDQSYVKGTIIRILFQNNDNFYTVLKAEVIDTNEDFDDEVTVTGFLPQIAEGDTYTFTGKIMLHAKYGKQLQAE
KFEKDLPQSKDGIIHYLSSDLFKGVGKKTARTIVEILGEDALNIILDDKSSLDQIPKLSQDKKDLIYNTINENQAIEKVM
IQLNDWGFGPQLAMKIYQFYKDDTIRVINESPYQLVMDIEGIGFNKADELARHIGIDNNHPERLKAALVYGMEQASLQNG
HTYIPDQILLETSFNLLTKNGSEVNPDALVDALTELCEEKKLLVEHEKNIYIPSLFYSETKTVQILHRLMNYQDQLKQFE
QSEIMLAIGEIEQLFEVSYAEKQKDALMQAMHSKLMILSGGPGTGKTTVVRGIVTLYAELHGLSLDYNDYDGQDFPVVVA
APTGRASKRLYESTGLEATTIHRLIGWTRDNKPDDILENEITAKLIIIDEMSMVDTWLMFQLMKAVPNDAQIIFVGDQDQ
LPSVGPGQVFKDLIESQIIPQIELNEVYRQQEGSSIVELAHQIKRNEPFDITKRYSDRSFIPCQTDQIPEVIEKIVTSAV
NKGYDMRDIQVLAPIYRGNAGIRALNKVLQKILNPPEDKKREMEFGDVVFRNHDKVLQLVNRPEDGVFNGDIGEIVGIFK
AAENALNKDVVIVDYDGNEVTYTKADLIEITHAYCCSIHKAQGSEFPIVIMPVVNQYYRMLQKNILYTGLTRAKQSLIFC
GDVNAFNDGIKRLGNARFTSFYQFLMDYFSTDDQKDIVKRDANAHETIHDEGLNSLPIQVGEMTEENMYLISPMINMGDI
SPYDYV

Nucleotide


Download         Length: 2421 bp        

>NTDB_id=590616 KYI13_RS07985 WP_219497472.1 1514300..1516720(-) (recD2) [Macrococcoides bohemicum strain 19Msa0383]
TTGGAGAACGCCACTTTATTTGATCAATCTTATGTTAAAGGCACTATTATCCGTATACTTTTTCAGAATAACGATAACTT
TTATACGGTATTAAAAGCCGAGGTAATCGATACAAATGAAGATTTTGATGATGAAGTGACGGTTACAGGTTTCCTGCCTC
AAATTGCAGAGGGTGACACTTATACATTTACCGGAAAGATTATGTTACACGCTAAGTACGGGAAACAATTGCAGGCAGAG
AAATTTGAGAAGGATTTACCACAGTCAAAAGACGGCATCATTCATTATCTTTCCAGCGACCTATTTAAAGGTGTCGGCAA
AAAAACAGCACGTACAATTGTTGAAATACTTGGCGAAGATGCACTGAATATTATTTTAGATGATAAAAGCAGTCTGGACC
AGATTCCGAAATTATCGCAAGATAAAAAAGATTTAATTTACAATACAATCAATGAAAATCAAGCGATTGAGAAAGTAATG
ATTCAATTAAATGATTGGGGCTTTGGCCCTCAGCTTGCAATGAAAATCTATCAGTTTTACAAAGATGATACGATAAGAGT
AATAAATGAATCACCTTATCAATTAGTGATGGATATCGAAGGTATAGGTTTTAACAAAGCTGATGAATTAGCCCGTCATA
TCGGTATAGATAACAATCATCCTGAACGATTAAAAGCAGCATTAGTTTATGGTATGGAGCAGGCGTCATTACAGAATGGT
CATACTTACATTCCGGATCAGATTTTACTCGAGACAAGCTTCAATCTATTAACTAAGAATGGTTCTGAAGTTAACCCCGA
TGCATTAGTAGATGCATTAACTGAACTTTGCGAAGAGAAGAAATTACTTGTCGAACATGAAAAAAATATTTATATACCTA
GTTTATTTTATTCTGAAACAAAGACCGTTCAAATATTACACCGATTAATGAATTATCAAGATCAACTTAAGCAGTTTGAG
CAATCTGAAATAATGCTTGCTATTGGAGAGATTGAACAGTTATTTGAAGTGTCATATGCAGAAAAACAGAAGGATGCTCT
AATGCAGGCGATGCATAGTAAACTGATGATTTTATCTGGTGGTCCTGGTACTGGGAAAACAACGGTTGTTAGAGGTATTG
TGACACTTTATGCAGAGCTGCATGGATTAAGTCTTGACTATAATGATTATGATGGGCAGGACTTTCCGGTAGTTGTTGCA
GCACCAACAGGTCGTGCATCGAAACGACTCTATGAATCCACTGGATTGGAAGCAACTACGATTCATAGACTTATCGGTTG
GACCCGAGATAATAAGCCAGATGATATTCTGGAAAATGAAATTACTGCAAAGCTTATCATTATTGATGAGATGTCTATGG
TTGACACGTGGTTAATGTTTCAATTGATGAAAGCAGTACCAAATGACGCTCAGATCATTTTTGTAGGTGATCAGGATCAG
TTGCCATCCGTAGGTCCAGGACAAGTATTTAAAGATTTAATAGAGTCTCAAATTATTCCTCAGATTGAACTGAATGAAGT
TTATCGTCAGCAGGAAGGATCTTCTATCGTTGAACTGGCACATCAGATTAAGCGAAATGAACCATTCGATATCACAAAAC
GATACAGTGATAGAAGTTTTATTCCATGTCAAACGGATCAAATTCCAGAAGTTATCGAGAAAATCGTTACATCAGCTGTT
AATAAAGGTTACGATATGCGGGACATTCAGGTGCTCGCGCCAATTTATCGAGGTAATGCAGGGATTCGTGCATTAAATAA
AGTTTTACAGAAAATATTAAATCCACCAGAAGATAAAAAGCGAGAAATGGAATTTGGTGATGTTGTCTTTAGAAATCACG
ATAAAGTTTTACAGCTTGTTAACCGACCTGAAGACGGTGTATTTAACGGAGACATCGGAGAAATCGTAGGTATCTTTAAA
GCAGCAGAAAATGCACTGAATAAGGATGTCGTCATTGTAGATTATGATGGGAATGAAGTAACGTATACAAAAGCTGATTT
AATAGAAATTACCCATGCATATTGTTGTTCGATTCATAAAGCTCAAGGGTCAGAATTTCCGATTGTCATTATGCCTGTTG
TCAATCAGTACTATAGAATGCTTCAGAAAAATATATTATATACAGGATTAACACGTGCGAAACAGTCACTTATCTTTTGC
GGTGATGTTAATGCCTTTAATGATGGTATAAAAAGATTAGGAAATGCCAGATTCACTTCTTTTTATCAATTTTTAATGGA
TTATTTTAGCACAGATGATCAGAAAGACATTGTAAAACGCGATGCAAATGCCCATGAAACTATACATGATGAAGGATTAA
ATAGCTTGCCAATTCAAGTTGGTGAAATGACCGAAGAGAATATGTATCTCATTTCACCGATGATTAATATGGGAGACATT
TCTCCCTATGATTATGTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-653)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

53.005

90.819

0.481