Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   KYI09_RS07040 Genome accession   NZ_CP079965
Coordinates   1353856..1356246 (-) Length   796 a.a.
NCBI ID   WP_219520890.1    Uniprot ID   -
Organism   Macrococcoides caseolyticum strain 19Msa0687     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1348856..1361246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYI09_RS07020 (KYI09_07025) - 1349921..1350232 (-) 312 WP_101144528.1 DUF1292 domain-containing protein -
  KYI09_RS07025 (KYI09_07030) ruvX 1350248..1350667 (-) 420 WP_099482912.1 Holliday junction resolvase RuvX -
  KYI09_RS07030 (KYI09_07035) - 1350660..1350905 (-) 246 WP_012657162.1 IreB family regulatory phosphoprotein -
  KYI09_RS07035 (KYI09_07040) alaS 1350985..1353609 (-) 2625 WP_219520888.1 alanine--tRNA ligase -
  KYI09_RS07040 (KYI09_07045) recD2 1353856..1356246 (-) 2391 WP_219520890.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KYI09_RS07045 (KYI09_07050) - 1356249..1356908 (-) 660 WP_219520892.1 tetratricopeptide repeat protein -
  KYI09_RS07050 (KYI09_07055) mnmA 1356969..1358084 (-) 1116 WP_012657166.1 tRNA 2-thiouridine(34) synthase MnmA -
  KYI09_RS07055 (KYI09_07060) - 1358096..1359223 (-) 1128 WP_219520894.1 cysteine desulfurase family protein -
  KYI09_RS07060 (KYI09_07065) - 1359395..1360390 (+) 996 WP_012657168.1 LLM class flavin-dependent oxidoreductase -
  KYI09_RS07065 (KYI09_07070) cymR 1360789..1361211 (-) 423 WP_012657169.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90320.65 Da        Isoelectric Point: 4.5508

>NTDB_id=590550 KYI09_RS07040 WP_219520890.1 1353856..1356246(-) (recD2) [Macrococcoides caseolyticum strain 19Msa0687]
MENMTLFEQSFVKGTITRILFYNNDNFYTVLKAEVIESNEDFDDDATITGYLPQIAEGDTYTFTGKIITHPKYGKQLQAD
KFEKDMPQSRDGIIHYLSSDLFKGVGKKTARTIVEVLGEDALNIILDDKSSLDQVPKLSDEKKELIYSTIHDNQAIEKIM
IQLNEFGFGPQLAMKIYQFYKDDTLKVINESPYQLVMDIEGIGFNKADELAGKLGIDNNHPERLKAALVFTIEQASNQNG
HTYIPDQVLLETSFNLLTKNGSQVNPDRLVIALTELTEEHKLVEHEKNIYIPSLFYSETKAVQILHRLMNHKNQVKEFEQ
SEVLMAIGELEALFEVSYAERQKDALITAMNSKLMILTGGPGTGKTTVVRGIVNLYAELHGLSLDYDDYDGQDYPIVVAA
PTGRASKRLQESTGLEATTIHRLIGWTKENKPDDVLETEITAKLVIIDEMSMVDTWLMFQLMKAVPDDAQIIFVGDQDQL
PSVGPGQVFKDMIDAHIMPQIELNEVYRQQEGSSIVELAHQIKRNEPFDIKKRYNDRSFIPCTSNQIPEVIEKIVRSAVN
KGYDMRDIQVLAPIYRGPAGIRALNKVLQEILNPSDENKRELQFGDVYFRTGDKVLQLVNRPEDNVFNGDIGEVTGIFMA
AENALNKDVVIVDYDGSEVTYTKADLMEITHAYCCSIHKSQGSEFPIVIMPVVNQYYRMLQKNIMYTGLTRAKQSLIFCG
DVHAFNEGIKRIGNARFTSFYQFLIDYFNEDEINDKKQDDQGNILPFNVGEMTEDNMHLVDPMINMEGITPYDFIS

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=590550 KYI09_RS07040 WP_219520890.1 1353856..1356246(-) (recD2) [Macrococcoides caseolyticum strain 19Msa0687]
TTGGAAAATATGACTTTGTTTGAGCAATCCTTTGTAAAAGGGACAATAACGAGAATATTATTCTATAACAATGATAATTT
CTATACTGTGCTGAAGGCTGAAGTGATTGAATCAAATGAAGATTTTGATGATGATGCTACGATTACAGGTTATCTCCCGC
AAATTGCAGAAGGCGATACATATACATTTACCGGTAAGATTATAACGCATCCGAAGTATGGAAAGCAGCTCCAGGCGGAT
AAATTTGAGAAGGATATGCCACAGTCGCGTGACGGTATTATTCATTATTTATCAAGTGATTTGTTTAAAGGAGTCGGTAA
GAAAACAGCGAGAACGATTGTAGAAGTGCTTGGTGAAGATGCACTGAACATTATTCTTGATGATAAAAGTAGTCTTGACC
AGGTACCGAAGTTATCAGATGAGAAGAAAGAATTAATCTATAGTACGATTCATGATAATCAGGCGATTGAGAAAATCATG
ATTCAGCTGAATGAATTTGGGTTCGGGCCGCAGCTTGCGATGAAGATTTATCAGTTCTATAAGGACGATACGCTGAAGGT
GATTAATGAATCTCCGTATCAACTCGTGATGGATATTGAAGGGATCGGATTTAATAAAGCGGATGAACTGGCAGGGAAAC
TCGGTATCGATAACAATCACCCAGAGCGTCTGAAAGCAGCGCTCGTGTTTACGATAGAACAAGCCTCTAACCAGAATGGA
CACACATATATTCCGGACCAGGTATTACTTGAAACAAGCTTCAATCTACTGACGAAAAATGGCAGTCAAGTCAATCCTGA
TCGCCTCGTTATCGCACTCACTGAACTGACAGAGGAACATAAGCTCGTTGAACATGAGAAGAACATCTATATTCCAAGTC
TATTCTATTCTGAAACAAAAGCTGTACAAATATTGCATCGATTAATGAACCATAAGAATCAGGTGAAAGAGTTCGAACAG
TCAGAAGTATTGATGGCAATCGGAGAACTGGAAGCACTGTTTGAAGTCAGCTATGCAGAACGGCAGAAAGATGCGCTTAT
TACGGCGATGAACTCTAAGCTGATGATATTAACGGGTGGGCCTGGTACAGGAAAGACGACAGTCGTACGTGGTATTGTTA
ATTTATATGCCGAGCTGCATGGCTTAAGTCTAGATTATGATGACTATGACGGACAGGACTATCCGATTGTCGTCGCAGCA
CCGACTGGTCGTGCGTCAAAGCGTCTTCAGGAATCGACGGGACTTGAAGCGACGACGATACACAGGTTAATTGGATGGAC
GAAAGAAAATAAACCGGACGACGTGCTGGAAACCGAAATTACAGCGAAACTGGTCATTATTGATGAAATGTCAATGGTTG
ATACGTGGCTTATGTTTCAATTGATGAAGGCTGTACCAGACGATGCCCAGATTATATTTGTCGGTGACCAGGATCAGCTC
CCTTCGGTCGGTCCAGGTCAAGTATTTAAGGATATGATTGATGCACACATTATGCCTCAGATTGAACTGAACGAGGTGTA
TAGACAGCAGGAAGGTTCCTCGATTGTCGAACTAGCACATCAGATTAAGCGCAATGAACCTTTTGACATTAAGAAAAGAT
ATAATGACAGAAGTTTTATACCGTGTACAAGCAACCAAATTCCGGAAGTGATTGAGAAAATTGTACGCAGCGCTGTGAAT
AAAGGGTACGATATGCGTGACATACAAGTACTCGCACCGATATATAGGGGGCCAGCAGGTATACGTGCATTGAATAAAGT
ATTGCAGGAAATACTAAATCCAAGCGATGAAAACAAACGTGAACTGCAGTTTGGTGATGTTTATTTCAGAACGGGTGATA
AAGTTTTGCAGCTTGTCAATCGACCTGAAGATAATGTATTTAATGGTGATATCGGAGAAGTCACTGGTATATTTATGGCA
GCTGAGAATGCATTAAATAAGGATGTTGTGATTGTTGACTATGATGGCAGTGAAGTAACGTATACGAAAGCAGATTTAAT
GGAAATTACACATGCATATTGCTGTTCTATTCATAAGTCCCAAGGTTCGGAATTTCCGATAGTAATCATGCCTGTAGTCA
ATCAGTACTACAGAATGTTGCAGAAGAATATTATGTATACGGGATTAACACGTGCAAAACAATCCCTGATATTCTGTGGA
GATGTTCACGCTTTTAATGAAGGAATTAAGCGTATCGGTAATGCAAGATTTACAAGCTTTTATCAGTTTCTAATCGATTA
TTTTAACGAAGACGAAATAAATGACAAAAAGCAAGATGACCAAGGTAATATACTACCTTTCAACGTGGGGGAGATGACTG
AAGACAATATGCATCTTGTTGATCCGATGATCAATATGGAAGGTATAACACCATATGATTTTATAAGTTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-718)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-653)

AAA domain (AAA_30)

(338-544)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.811

100

0.511