Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FGCSD_RS09330 Genome accession   NZ_AP018726
Coordinates   1874907..1875689 (-) Length   260 a.a.
NCBI ID   WP_003053880.1    Uniprot ID   A0A9X9SKT8
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1869907..1880689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS09300 (FGCSD_1808) - 1870551..1871114 (-) 564 WP_343237549.1 CBS domain-containing protein -
  FGCSD_RS09305 (FGCSD_1809) - 1871376..1871675 (-) 300 WP_129556205.1 rhodanese-like domain-containing protein -
  FGCSD_RS09310 (FGCSD_1810) - 1871668..1873320 (-) 1653 WP_129556206.1 FAD-dependent oxidoreductase -
  FGCSD_RS09315 (FGCSD_1811) - 1873338..1873676 (-) 339 WP_129556207.1 rhodanese-like domain-containing protein -
  FGCSD_RS09320 (FGCSD_1812) - 1873890..1874150 (+) 261 WP_003053835.1 metal-sensitive transcriptional regulator -
  FGCSD_RS09325 (FGCSD_1813) - 1874217..1874768 (-) 552 WP_172596024.1 isochorismatase family cysteine hydrolase -
  FGCSD_RS09330 (FGCSD_1814) codY 1874907..1875689 (-) 783 WP_003053880.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FGCSD_RS09335 (FGCSD_1815) - 1875954..1877168 (-) 1215 WP_003060547.1 pyridoxal phosphate-dependent aminotransferase -
  FGCSD_RS09340 (FGCSD_1816) - 1877505..1877957 (+) 453 WP_003052566.1 universal stress protein -
  FGCSD_RS09345 (FGCSD_1817) - 1878120..1879508 (-) 1389 WP_129556209.1 Cof-type HAD-IIB family hydrolase -
  FGCSD_RS09350 (FGCSD_1818) - 1879581..1880546 (+) 966 WP_129556210.1 asparaginase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28748.89 Da        Isoelectric Point: 4.4678

>NTDB_id=59052 FGCSD_RS09330 WP_003053880.1 1874907..1875689(-) (codY) [Streptococcus dysgalactiae strain Kdys0611]
MPNLLEKTRKITSILQRSVDSLETELPYNTMASRLADIIDCNACIINGGGTLLGYAMKYKTNTDRVEEFFEAKQFPDTYV
KAASRVYDTEANLSVESELTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDNEFSDEDLILVEISSTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVAAILGELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEF

Nucleotide


Download         Length: 783 bp        

>NTDB_id=59052 FGCSD_RS09330 WP_003053880.1 1874907..1875689(-) (codY) [Streptococcus dysgalactiae strain Kdys0611]
ATGCCTAACTTATTAGAAAAAACTCGTAAAATTACGTCTATTCTACAGCGCTCTGTAGATAGCTTGGAGACAGAACTCCC
ATATAATACGATGGCGTCTCGCTTGGCAGATATTATTGACTGTAATGCCTGCATTATCAATGGCGGAGGAACCCTACTTG
GTTACGCCATGAAATATAAAACCAACACAGACCGTGTTGAGGAATTTTTTGAAGCTAAGCAATTTCCAGATACTTATGTC
AAAGCAGCTAGCCGTGTCTATGACACTGAGGCCAATCTTTCAGTGGAAAGTGAACTAACCATTTTTCCTGTGGAATCGAA
AGACATCTATCCAGATGGTTTGACAACAATTGCACCGATTTATGGTGGAGGTATGCGTTTAGGGTCTCTTATCATTTGGC
GCAACGATAATGAGTTTAGTGATGAGGACCTCATCTTGGTTGAAATTTCAAGCACGGTTGTTGGGATTCAGTTGTTAAAC
CTTCAAACAGAAAACCTGGAAGAAACGATCCGCAAGCAAACTGCTGTCAACATGGCTATTAACACCCTATCTTATTCAGA
AATGAAGGCTGTTGCAGCTATTCTTGGTGAATTGGATGGTAACGAAGGCCGTTTAACAGCTTCTGTCATTGCTGACCGTA
TTGGCATTACACGATCTGTGATCGTCAATGCCCTTCGTAAATTGGAAAGTGCTGGTATTATTGAAAGTCGCTCTCTCGGC
ATGAAGGGAACCTACCTCAAGGTTATTAATGAGGGTATTTTTGATAAATTGAAAGAATTTTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-260)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X9SKT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

66.537

98.846

0.658
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

95

0.504

Multiple sequence alignment