Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FGCSD_RS03290 Genome accession   NZ_AP018726
Coordinates   631338..631934 (+) Length   198 a.a.
NCBI ID   WP_003051598.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 626338..636934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS03270 (FGCSD_0585) - 627103..627624 (+) 522 WP_111717040.1 transcription repressor NadR -
  FGCSD_RS03275 (FGCSD_0586) - 627726..628268 (+) 543 WP_129555438.1 hypothetical protein -
  FGCSD_RS03280 (FGCSD_0587) - 628395..629165 (+) 771 WP_129555439.1 formate/nitrite transporter family protein -
  FGCSD_RS03285 (FGCSD_0588) pbp2b 629272..631326 (+) 2055 WP_129555440.1 penicillin-binding protein PBP2B -
  FGCSD_RS03290 (FGCSD_0589) recR 631338..631934 (+) 597 WP_003051598.1 recombination mediator RecR Machinery gene
  FGCSD_RS03295 (FGCSD_0590) - 632098..633144 (+) 1047 WP_129555441.1 D-alanine--D-alanine ligase -
  FGCSD_RS03300 (FGCSD_0591) murF 633350..634717 (+) 1368 WP_129555442.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  FGCSD_RS03305 - 634816..635512 (+) 697 Protein_578 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21609.74 Da        Isoelectric Point: 4.6595

>NTDB_id=59014 FGCSD_RS03290 WP_003051598.1 631338..631934(+) (recR) [Streptococcus dysgalactiae strain Kdys0611]
MLYPTPIAKLIESYSKLPGIGVKTATRLAFYTIGMSDEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCSICTDTSRDQT
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKSLITRLMDGKVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=59014 FGCSD_RS03290 WP_003051598.1 631338..631934(+) (recR) [Streptococcus dysgalactiae strain Kdys0611]
GTGCTTTACCCAACCCCTATTGCAAAATTAATCGAAAGTTATTCCAAACTCCCAGGAATTGGGGTAAAAACGGCAACCAG
ACTTGCCTTTTATACAATTGGAATGTCTGACGAGGATGTCAATGACTTTGCTAAAAATTTATTGGCAGCTAAAAGAGAAT
TAACCTATTGTTCTATTTGTGGCAACCTGACAGATGATGATCCTTGTTCTATCTGCACAGATACAAGTCGTGACCAGACA
ACGATTCTTGTGGTGGAAGATGCTAAAGATGTTTCTGCTATGGAAAAAATTCAAGAGTATCATGGTTATTACCATGTGCT
GCATGGTTTAATTTCGCCGATGAATGGTGTTGGTCCGGATGATATCAATCTAAAAAGTTTAATTACCCGTTTAATGGACG
GTAAAGTGACTGAAGTTATCGTAGCGACCAATGCCACAGCTGATGGTGAAGCAACATCTATGTATATCTCACGGGTCTTG
AAACCAGCAGGAATCAAAGTTACCCGCTTAGCAAGAGGGCTCGCAGTGGGGTCAGATATTGAATACGCAGATGAAGTCAC
CTTGTTAAGAGCTATTGAAAACCGCACAGAACTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.769

98.485

0.5

Multiple sequence alignment