Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   LPB404_RS04300 Genome accession   NZ_CP079821
Coordinates   848577..849389 (+) Length   270 a.a.
NCBI ID   WP_219075211.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 843577..854389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS04270 (LPB404_04270) - 843664..844545 (+) 882 WP_219075116.1 F0F1 ATP synthase subunit gamma -
  LPB404_RS04275 (LPB404_04275) atpD 844634..846040 (+) 1407 WP_031573407.1 F0F1 ATP synthase subunit beta -
  LPB404_RS04280 (LPB404_04280) - 846054..846473 (+) 420 WP_219075117.1 F0F1 ATP synthase subunit epsilon -
  LPB404_RS04285 (LPB404_04285) - 846713..846943 (+) 231 WP_219075118.1 DUF1146 family protein -
  LPB404_RS04290 (LPB404_04290) murA 847010..848293 (+) 1284 WP_219075119.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LPB404_RS04295 (LPB404_04295) - 848283..848471 (+) 189 WP_023022752.1 DNA-directed RNA polymerase subunit beta -
  LPB404_RS04300 (LPB404_04300) endA 848577..849389 (+) 813 WP_219075211.1 DNA/RNA non-specific endonuclease Machinery gene
  LPB404_RS04305 (LPB404_04305) - 849556..850275 (+) 720 WP_219075120.1 matrixin family metalloprotease -
  LPB404_RS04310 (LPB404_04310) - 850278..850649 (+) 372 WP_219075121.1 hypothetical protein -
  LPB404_RS04315 (LPB404_04315) - 850732..852639 (+) 1908 WP_219075122.1 ABC-F family ATP-binding cassette domain-containing protein -
  LPB404_RS04320 (LPB404_04320) - 852640..853512 (+) 873 WP_123160103.1 XRE/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 29549.00 Da        Isoelectric Point: 9.2980

>NTDB_id=589761 LPB404_RS04300 WP_219075211.1 848577..849389(+) (endA) [Streptococcus rubneri strain LPB0404]
MKKSGQTLLGLVVAAALSIGGYYFSQPQPVASHSQVQTVVTSSQQATPSKELAESVLTDGVRTKLGKNIQWNEAGAFIIN
QNKTNLDADVASLPYADTKTKTVKGREIPTVANALMTKATRQYQKREQTDVDWTPAGWHQVTNLAGEYDHAVDRGHLLGY
ALIGKLDGFDASTSNPKNIAVQTAWANQARDSFSTGQNYYETIVRKALDNNKRVRYRVTLHYASDDDLVPVGSQIEAKSS
DGSLEFNVFVPNVQSGISLDYRTGKVTVHR

Nucleotide


Download         Length: 813 bp        

>NTDB_id=589761 LPB404_RS04300 WP_219075211.1 848577..849389(+) (endA) [Streptococcus rubneri strain LPB0404]
ATGAAAAAATCGGGACAAACCTTACTAGGCTTGGTGGTGGCTGCAGCTCTCTCGATCGGCGGGTATTATTTTAGTCAACC
CCAGCCAGTCGCTAGTCACTCTCAAGTTCAAACGGTTGTCACTTCGAGTCAACAAGCAACACCGAGTAAGGAACTAGCAG
AGAGTGTTCTGACGGATGGTGTTCGTACGAAACTAGGAAAGAACATTCAATGGAACGAAGCGGGCGCTTTCATTATTAAC
CAGAACAAAACCAATCTGGATGCAGATGTTGCGAGTCTCCCTTATGCAGATACGAAGACAAAGACTGTAAAAGGACGAGA
AATTCCCACAGTTGCCAACGCTTTGATGACCAAGGCGACTCGTCAATACCAAAAGAGAGAGCAGACAGATGTAGATTGGA
CGCCAGCTGGCTGGCACCAAGTAACCAATTTAGCTGGGGAATACGACCATGCGGTTGATCGGGGACACCTTCTCGGCTAT
GCCTTGATTGGCAAGCTTGATGGTTTTGATGCCTCAACGAGCAATCCAAAAAATATAGCGGTTCAAACAGCTTGGGCGAA
TCAAGCTCGTGATAGTTTTTCGACAGGACAAAATTATTATGAGACCATTGTTCGGAAGGCCTTAGACAATAATAAGCGGG
TTCGTTATCGGGTGACTCTCCACTATGCATCGGATGATGATTTGGTACCAGTCGGCAGTCAAATTGAAGCAAAATCTAGT
GATGGTAGTCTAGAGTTTAATGTTTTTGTTCCAAATGTTCAGAGTGGGATTAGTTTGGATTATCGTACGGGAAAAGTAAC
AGTGCATCGTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(75-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.279

100

0.678
  endA Streptococcus pneumoniae D39

67.279

100

0.678
  endA Streptococcus pneumoniae R6

67.279

100

0.678
  endA Streptococcus pneumoniae TIGR4

67.279

100

0.678