Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KXZ66_RS08645 Genome accession   NZ_CP079759
Coordinates   1671116..1671895 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. LJBS17     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1666116..1676895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXZ66_RS08625 (KXZ66_08625) trmFO 1666809..1668116 (+) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KXZ66_RS08630 (KXZ66_08630) xerC 1668184..1669098 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  KXZ66_RS08635 (KXZ66_08635) clpQ 1669111..1669656 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  KXZ66_RS08640 (KXZ66_08640) hslU 1669673..1671076 (+) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  KXZ66_RS08645 (KXZ66_08645) codY 1671116..1671895 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KXZ66_RS08650 (KXZ66_08650) flgB 1672275..1672664 (+) 390 WP_049139999.1 flagellar basal body rod protein FlgB -
  KXZ66_RS08655 (KXZ66_08655) flgC 1672664..1673116 (+) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  KXZ66_RS08660 (KXZ66_08660) fliE 1673127..1673447 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  KXZ66_RS08665 (KXZ66_08665) fliF 1673493..1675103 (+) 1611 WP_049140002.1 flagellar basal-body MS-ring/collar protein FliF -
  KXZ66_RS08670 (KXZ66_08670) fliG 1675116..1676132 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  KXZ66_RS08675 (KXZ66_08675) fliH 1676125..1676877 (+) 753 WP_049140191.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=589314 KXZ66_RS08645 WP_003220850.1 1671116..1671895(+) (codY) [Bacillus sp. LJBS17]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=589314 KXZ66_RS08645 WP_003220850.1 1671116..1671895(+) (codY) [Bacillus sp. LJBS17]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467