Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   KYE95_RS02415 Genome accession   NZ_CP079758
Coordinates   522772..523329 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA0386     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 517772..528329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYE95_RS02400 (KYE95_02400) pilY1 517870..521355 (-) 3486 WP_003115287.1 type 4a pilus biogenesis protein PilY1 -
  KYE95_RS02405 (KYE95_02405) pilX 521367..521954 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  KYE95_RS02410 (KYE95_02410) pilW 521951..522775 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  KYE95_RS02415 (KYE95_02415) pilV 522772..523329 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  KYE95_RS02420 (KYE95_02420) - 523320..523826 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  KYE95_RS02425 (KYE95_02425) - 523932..524441 (-) 510 WP_003112829.1 Tfp pilus assembly protein FimT/FimU -
  KYE95_RS02430 (KYE95_02430) thiO 524576..525670 (+) 1095 WP_010895678.1 glycine oxidase ThiO -
  KYE95_RS02435 (KYE95_02435) pilR 525716..527053 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=589250 KYE95_RS02415 WP_003119423.1 522772..523329(-) (pilV) [Pseudomonas aeruginosa strain PA0386]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=589250 KYE95_RS02415 WP_003119423.1 522772..523329(-) (pilV) [Pseudomonas aeruginosa strain PA0386]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995