Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KXZ80_RS06360 Genome accession   NZ_CP079737
Coordinates   1330716..1332560 (+) Length   614 a.a.
NCBI ID   WP_021432618.1    Uniprot ID   T4VFI3
Organism   Paraclostridium bifermentans strain DSM 14991     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1325716..1337560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXZ80_RS06350 (KXZ80_06350) - 1327924..1328367 (-) 444 WP_021432616.1 MarR family winged helix-turn-helix transcriptional regulator -
  KXZ80_RS06355 (KXZ80_06355) - 1328519..1330723 (+) 2205 WP_021432617.1 ABC transporter ATP-binding protein -
  KXZ80_RS06360 (KXZ80_06360) rcrQ 1330716..1332560 (+) 1845 WP_021432618.1 ABC transporter ATP-binding protein Regulator
  KXZ80_RS06365 (KXZ80_06365) cspD 1332671..1332874 (+) 204 WP_021429181.1 cold-shock protein CspD -
  KXZ80_RS06370 (KXZ80_06370) asnB 1333073..1334911 (+) 1839 WP_021432619.1 asparagine synthase (glutamine-hydrolyzing) -
  KXZ80_RS06375 (KXZ80_06375) - 1334931..1335620 (+) 690 WP_021432620.1 response regulator transcription factor -
  KXZ80_RS06380 (KXZ80_06380) - 1335623..1337077 (+) 1455 WP_038285155.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68350.05 Da        Isoelectric Point: 6.7347

>NTDB_id=589091 KXZ80_RS06360 WP_021432618.1 1330716..1332560(+) (rcrQ) [Paraclostridium bifermentans strain DSM 14991]
MSNKKQSTPKMGGPMGGMRGTEKAKDFKGTMKNLFNYLKPYRISIFIVVIFAIGSSAFSIVGPKVLGKATTEIFEGLIRK
VSNQGNAGIDFTYISKVLLILLGLYVISALFSFVQSFIVSGISQKVSYKLRKEISEKINRMPLKYFDKRTHGEVLSRVTN
DIDTLSQNLNQIMTQIITAVTTVIGVLIMMLSISWQMTIASLLILPISMIIIGFIVKNSQSHFKSQQKYLGHVNGQVEET
YGGHNIVKAFNREDAAIAEFNELNDKLYESAWKSQFLSGMMMPMMTFIGNLGYVLVSILGGYFTIKKTIQVGDILSFIQY
VRSFNQPIAQTAQVANIMQSMAAAAERAFEFLEEEEEIQVSDHPVSVENIKGDVSFDHVNFGYSEDKIIINDFTTNIKAG
QKVAIVGPTGAGKTTVVKLLMRFYDVNKGAILIDGKNINDFNRADLRSLFGMVLQDTWLFNGSIMENIRYSKLNATDEEV
IAASKAAHVHHFVKTLPAGYSMELNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMENLMEGR
TSFIIAHRLSTIKDADLILVMKDGDIIEQGSHEELLKDDGFYASLYNSQFEDCE

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=589091 KXZ80_RS06360 WP_021432618.1 1330716..1332560(+) (rcrQ) [Paraclostridium bifermentans strain DSM 14991]
ATGAGTAATAAAAAGCAATCTACTCCTAAAATGGGCGGACCTATGGGAGGAATGAGAGGAACAGAAAAAGCAAAAGATTT
TAAAGGAACAATGAAAAATCTTTTTAATTATTTAAAGCCTTATAGAATATCTATATTTATAGTGGTTATATTTGCAATAG
GAAGTTCAGCATTTTCTATAGTAGGACCTAAGGTATTAGGTAAAGCTACTACTGAGATATTTGAAGGACTTATTAGAAAA
GTTAGCAATCAAGGCAATGCAGGCATAGATTTTACTTATATAAGTAAAGTGCTTTTGATTTTATTAGGACTATATGTAAT
AAGTGCGTTATTCTCATTTGTTCAATCATTTATAGTTTCTGGAATATCTCAAAAGGTTTCATATAAATTGAGAAAAGAAA
TTTCAGAAAAAATAAACCGTATGCCACTTAAGTATTTTGATAAAAGAACACATGGTGAAGTACTATCAAGAGTTACAAAT
GATATAGATACGTTAAGTCAAAACTTAAATCAAATTATGACTCAAATTATTACTGCTGTTACAACAGTAATAGGGGTTCT
TATAATGATGTTATCTATAAGTTGGCAAATGACTATAGCTTCACTATTAATATTACCTATATCTATGATAATAATAGGTT
TTATTGTTAAGAACTCACAAAGCCACTTTAAATCTCAACAAAAATATTTAGGGCATGTTAATGGTCAAGTTGAAGAAACT
TATGGTGGACACAATATAGTTAAAGCATTCAATAGAGAAGATGCAGCTATAGCAGAGTTTAATGAGTTAAATGATAAGTT
ATATGAATCTGCATGGAAATCTCAATTCCTATCTGGAATGATGATGCCGATGATGACGTTTATAGGTAACTTAGGTTATG
TTTTAGTATCTATATTAGGTGGATACTTTACTATAAAGAAAACTATTCAAGTTGGGGATATACTTTCATTTATACAATAT
GTAAGAAGTTTTAACCAACCAATAGCTCAAACTGCACAAGTTGCAAATATAATGCAATCTATGGCAGCAGCAGCAGAAAG
AGCATTTGAATTTTTAGAAGAAGAAGAAGAAATCCAAGTAAGTGATCATCCAGTTAGCGTTGAAAATATCAAAGGGGATG
TTTCTTTTGATCATGTTAACTTTGGATATTCTGAAGATAAAATAATAATAAATGACTTTACAACAAATATAAAAGCAGGA
CAAAAAGTAGCTATAGTTGGGCCTACTGGTGCTGGTAAAACTACAGTTGTAAAATTATTAATGCGTTTTTATGATGTAAA
TAAAGGTGCTATACTGATAGATGGTAAAAATATAAATGATTTTAACAGAGCCGACTTACGTAGCTTATTTGGAATGGTTT
TACAAGACACATGGCTATTTAATGGTAGCATAATGGAAAACATAAGATACTCTAAGCTTAATGCTACTGATGAAGAGGTT
ATAGCGGCATCTAAAGCAGCTCATGTGCATCACTTTGTAAAAACTCTTCCAGCAGGATATAGCATGGAATTAAATGAAGA
AGCTAGTAACGTATCTCAAGGTCAAAAGCAACTTTTAACTATAGCTCGTGCGATTTTAGCAGATCCTAAAATACTTATAT
TAGATGAAGCTACTAGTTCAGTTGATACTCGTACAGAAGTTTTAATACAAAAAGCTATGGAAAATCTTATGGAAGGTAGA
ACAAGCTTTATAATAGCTCATAGATTATCAACTATAAAAGATGCAGATTTAATACTAGTTATGAAAGATGGAGATATAAT
TGAACAAGGAAGCCATGAAGAATTATTAAAAGATGATGGATTCTATGCATCTTTATATAATAGTCAATTTGAAGACTGTG
AATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(45-327)

ABC transporter (ABC_tran)

(391-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T4VFI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.877

95.44

0.495