Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KXY09_RS08250 Genome accession   NZ_CP079719
Coordinates   1650069..1650848 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain LABIM44     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1645069..1655848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXY09_RS08230 (KXY09_08230) trmFO 1645756..1647063 (+) 1308 WP_168984998.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KXY09_RS08235 (KXY09_08235) xerC 1647133..1648050 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  KXY09_RS08240 (KXY09_08240) hslV 1648066..1648611 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  KXY09_RS08245 (KXY09_08245) hslU 1648628..1650031 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  KXY09_RS08250 (KXY09_08250) codY 1650069..1650848 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KXY09_RS08255 (KXY09_08255) flgB 1651202..1651591 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  KXY09_RS08260 (KXY09_08260) flgC 1651591..1652043 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  KXY09_RS08265 (KXY09_08265) fliE 1652054..1652374 (+) 321 WP_052827419.1 flagellar hook-basal body complex protein FliE -
  KXY09_RS08270 (KXY09_08270) fliF 1652417..1654027 (+) 1611 WP_168984997.1 flagellar basal-body MS-ring/collar protein FliF -
  KXY09_RS08275 (KXY09_08275) fliG 1654040..1655056 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  KXY09_RS08280 (KXY09_08280) fliH 1655049..1655804 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=588903 KXY09_RS08250 WP_003154263.1 1650069..1650848(+) (codY) [Bacillus velezensis strain LABIM44]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=588903 KXY09_RS08250 WP_003154263.1 1650069..1650848(+) (codY) [Bacillus velezensis strain LABIM44]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ACCAGCAGATTGAAAATGATCGTATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471