Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   KV708_RS21985 Genome accession   NZ_CP079703
Coordinates   4770561..4770965 (-) Length   134 a.a.
NCBI ID   WP_003071158.1    Uniprot ID   A0A5S4T294
Organism   Comamonas thiooxydans strain N1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4765561..4775965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV708_RS21970 (KV708_21860) - 4767393..4769636 (-) 2244 WP_046461795.1 methyl-accepting chemotaxis protein -
  KV708_RS21975 (KV708_21865) - 4769656..4770183 (-) 528 WP_003071161.1 chemotaxis protein CheW -
  KV708_RS21980 (KV708_21870) - 4770199..4770561 (-) 363 WP_003071159.1 PleD family two-component system response regulator -
  KV708_RS21985 (KV708_21875) pilG 4770561..4770965 (-) 405 WP_003071158.1 PleD family two-component system response regulator Regulator
  KV708_RS21990 (KV708_21880) - 4771016..4771168 (-) 153 WP_034399566.1 rubredoxin -
  KV708_RS21995 (KV708_21885) - 4771284..4772252 (+) 969 WP_012839730.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KV708_RS22000 (KV708_21890) hemL 4772236..4773540 (+) 1305 WP_003071150.1 glutamate-1-semialdehyde 2,1-aminomutase -
  KV708_RS22005 (KV708_21895) - 4773703..4775475 (+) 1773 WP_057094796.1 alkaline phosphatase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14667.90 Da        Isoelectric Point: 6.9230

>NTDB_id=588729 KV708_RS21985 WP_003071158.1 4770561..4770965(-) (pilG) [Comamonas thiooxydans strain N1]
MTASGAPLRVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALSKVNDYQPQLIFCDILMPKLDGYQTCAIIKRNARFA
NTPVVMLSSKDGVFDKARGRMVGCQDYLTKPFTKDQLLQAVQQFALQAADVGAA

Nucleotide


Download         Length: 405 bp        

>NTDB_id=588729 KV708_RS21985 WP_003071158.1 4770561..4770965(-) (pilG) [Comamonas thiooxydans strain N1]
GTGACAGCATCTGGTGCGCCTTTGCGCGTTCTGGTCGTGGATGACAGCAACACCATCCGCCGCAGCGCTGAAATTTTCCT
CAAGCAAGGTGGTCACGAAGTTCTTCTTGCCGACGATGGCTTCGATGCCCTGTCCAAGGTCAATGACTACCAGCCCCAGC
TCATCTTCTGCGACATTCTGATGCCCAAACTCGATGGCTATCAGACCTGCGCCATCATCAAGCGCAATGCTCGCTTTGCC
AATACGCCCGTCGTGATGCTGTCATCCAAGGACGGTGTATTCGACAAGGCTCGCGGTCGCATGGTGGGCTGCCAGGACTA
TCTGACCAAACCGTTTACCAAAGATCAATTGCTGCAAGCCGTACAACAATTCGCGCTGCAAGCTGCAGATGTGGGAGCTG
CATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4T294

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

58.621

86.567

0.507