Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KYE74_RS00490 Genome accession   NZ_CP079233
Coordinates   129148..130980 (+) Length   610 a.a.
NCBI ID   WP_226643924.1    Uniprot ID   -
Organism   Bifidobacterium pseudocatenulatum strain YIT11953     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 124148..135980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYE74_RS00470 (KYE74_00470) thiS 124492..124686 (-) 195 WP_055062916.1 sulfur carrier protein ThiS -
  KYE74_RS00475 (KYE74_00475) - 125295..126260 (+) 966 WP_226856958.1 aldo/keto reductase -
  KYE74_RS00480 (KYE74_00480) - 126379..126873 (+) 495 WP_065439068.1 MarR family winged helix-turn-helix transcriptional regulator -
  KYE74_RS00485 (KYE74_00485) - 127179..129146 (+) 1968 WP_404802286.1 ABC transporter ATP-binding protein -
  KYE74_RS00490 (KYE74_00490) rcrQ 129148..130980 (+) 1833 WP_226643924.1 ABC transporter ATP-binding protein Regulator
  KYE74_RS00495 (KYE74_00495) - 131066..132034 (-) 969 WP_226555210.1 FAD:protein FMN transferase -
  KYE74_RS00500 (KYE74_00500) - 132141..133547 (+) 1407 WP_404802246.1 MFS transporter -
  KYE74_RS00505 (KYE74_00505) - 133940..135703 (+) 1764 WP_404802250.1 FTR1 family protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 66568.14 Da        Isoelectric Point: 5.9505

>NTDB_id=588331 KYE74_RS00490 WP_226643924.1 129148..130980(+) (rcrQ) [Bifidobacterium pseudocatenulatum strain YIT11953]
MPGGPMGRGRGAAEKPQDFGGVMKKLMHFCRHYIPAIIVALVLGAIGTVCQIVGPDKLKDMTNEIAKGLPALVNGKPVLG
AIDMDAVTHIAWLLVALYVGYAVLCYVQSWMMANVTQRTAQELREAISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQ
TLGQSVGSLITSVTLFVGALIMMFYNNVIMTVCAIVSSLVGLLIMGAIMKVSQKYFSRQQIALGDVNGHVEEMYAGHTVV
KAYCGEADSIRAFEKYNGDLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQP
LSQFAQAFQNLQRCAAASERVFGFLEEPEMEDETGKQALLGASGKPVRGDVEFSHVKFGYDPSKTIINDFSASVKSGQKV
AIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIEDA
CKAVGLHHYIMSLPNGYDTVLDDKATLSQGQKQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFV
IAHRLSTIRDADMILVMNHGDIVESGTHEELLAKGGFYADIYNSQFALTD

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=588331 KYE74_RS00490 WP_226643924.1 129148..130980(+) (rcrQ) [Bifidobacterium pseudocatenulatum strain YIT11953]
ATGCCAGGAGGACCTATGGGACGCGGCCGCGGAGCCGCTGAAAAACCACAGGATTTCGGCGGTGTGATGAAGAAGCTGAT
GCATTTCTGCCGCCACTACATTCCCGCCATCATTGTGGCGCTCGTATTGGGCGCGATCGGCACGGTATGCCAGATCGTCG
GTCCGGACAAGCTCAAGGACATGACCAACGAGATCGCCAAAGGCCTGCCTGCGCTGGTCAACGGCAAGCCGGTGCTCGGT
GCGATCGACATGGACGCGGTCACACACATCGCATGGCTGCTGGTGGCGCTGTATGTGGGCTATGCGGTGCTGTGCTACGT
GCAAAGCTGGATGATGGCGAACGTCACGCAGCGTACCGCACAGGAGCTGCGCGAAGCCATCAGCGTGAAGATCAACAAGC
TGCCGCTCAAGTATTTCGACAAGGTCAGCTACGGCGATGTGCTCAGCCGCATCACCAACGATGTGGACGCCATCGGCCAG
ACGCTCGGCCAGTCGGTCGGCTCGCTGATCACGTCGGTCACGCTGTTCGTGGGCGCGCTGATCATGATGTTCTACAACAA
TGTGATCATGACGGTGTGCGCCATCGTTTCCAGCCTGGTTGGCCTGCTCATCATGGGCGCAATCATGAAGGTTTCGCAGA
AGTACTTCTCGCGCCAGCAGATCGCGTTGGGCGATGTCAACGGTCACGTCGAAGAGATGTACGCCGGCCACACCGTGGTC
AAGGCGTATTGCGGCGAGGCTGATTCGATTCGCGCGTTCGAAAAGTACAACGGCGATTTGTACGATTCGGGATGGAAGAG
CCAGTTCCTTTCCGGCCTGATGATGCCGTTGATGAATTTCGTCGGCAATTTCGGCTACGTGGTTGTGTGCGTGGTTGGCG
CTGTGCTTGCGATGGATGGCAAGATCGAGTTTGGTGTGATCGTTGCGTTCATGATGTACATTCGACTGTTCACCCAGCCG
CTTTCCCAGTTCGCGCAGGCATTCCAGAACCTGCAGCGTTGCGCGGCCGCTTCCGAGCGCGTGTTTGGCTTCCTTGAAGA
GCCGGAGATGGAGGATGAGACCGGCAAGCAGGCGCTGTTGGGTGCTTCCGGCAAACCGGTGCGCGGTGACGTTGAGTTCA
GTCATGTGAAGTTCGGTTACGATCCGAGCAAGACGATCATCAACGATTTCTCCGCTTCGGTGAAGTCCGGTCAGAAGGTT
GCGATTGTTGGTCCGACCGGTGCCGGCAAGACCACGATGGTGAATCTGCTGATGCGTTTCTATGAGATTTCGGGCGGTTC
GATTGCGATTGATGGTGTGGATACGAAGTCCGTGCCACGCTGGAACGTGCATGACCAGTTCTCCATGGTATTGCAGGATA
CGTGGGTGTTCCGTGGAACAGTGCGTGAAAACATCGCGTATTCGAAGCCGGGCGTCACCGACAAGCAGATCGAGGACGCA
TGCAAGGCCGTGGGGCTGCACCACTACATCATGTCGCTGCCGAATGGCTATGACACAGTGCTTGACGACAAGGCCACGCT
TTCGCAGGGTCAGAAGCAGTTGCTCACCATTGCGCGAGCCATGGTTGAGGATGCGCCGATTCTGATTCTCGACGAGGCCA
CCTCTTCGGTCGATACGCGTACGGAAGAGCTGATTCAGAAGGCCATGGACGCGCTGACCGTGGACCGTACGTCGTTCGTG
ATCGCGCACCGTCTGTCCACCATCCGCGATGCGGACATGATTTTGGTCATGAACCATGGCGACATTGTGGAAAGCGGTAC
GCATGAGGAGCTGCTCGCCAAAGGCGGTTTCTACGCCGACATCTACAACAGCCAGTTCGCCCTCACCGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(388-535)

ABC transporter transmembrane region (ABC_membrane)

(38-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.413

96.066

0.513