Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SA27298_RS07425 Genome accession   NZ_AP018548
Coordinates   1515497..1516285 (-) Length   262 a.a.
NCBI ID   WP_003031214.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CCUG 27928     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1510497..1521285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS07400 (SA27298_1512) - 1510632..1511309 (-) 678 WP_003030358.1 DUF2786 domain-containing protein -
  SA27298_RS07405 (SA27298_1513) - 1511311..1511562 (-) 252 WP_018543574.1 hypothetical protein -
  SA27298_RS07410 (SA27298_1514) - 1512211..1512582 (-) 372 WP_003030375.1 hypothetical protein -
  SA27298_RS07415 (SA27298_1515) aspS 1512691..1514412 (-) 1722 WP_248526934.1 aspartate--tRNA ligase -
  SA27298_RS07420 (SA27298_1516) - 1514922..1515497 (-) 576 WP_003031209.1 isochorismatase family cysteine hydrolase -
  SA27298_RS07425 (SA27298_1517) codY 1515497..1516285 (-) 789 WP_003031214.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SA27298_RS07430 (SA27298_1518) - 1516450..1517664 (-) 1215 WP_003031210.1 pyridoxal phosphate-dependent aminotransferase -
  SA27298_RS07435 (SA27298_1519) - 1517816..1518268 (+) 453 WP_003028799.1 universal stress protein -
  SA27298_RS07440 (SA27298_1520) - 1518314..1519702 (-) 1389 WP_003031203.1 Cof-type HAD-IIB family hydrolase -
  SA27298_RS07445 (SA27298_1521) - 1519767..1520729 (+) 963 WP_003031204.1 asparaginase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29707.04 Da        Isoelectric Point: 5.2460

>NTDB_id=58833 SA27298_RS07425 WP_003031214.1 1515497..1516285(-) (codY) [Streptococcus anginosus strain CCUG 27928]
MANLLAKTRKITSILRRSDERLQDELPYNAITQQLAEIMDCNACIVNSKGRLLGYFMRYKTNNDRVEAFYQTKIFPEEYV
RTANLMYDTEANLPVNHALSIFPVETKDEFPDGLTTISPIHVSGIRLGTLIVWRNDKEFDDDDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDVFEEIKRRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=58833 SA27298_RS07425 WP_003031214.1 1515497..1516285(-) (codY) [Streptococcus anginosus strain CCUG 27928]
ATGGCAAACTTATTAGCAAAAACACGAAAAATTACATCTATTTTGCGTCGTTCAGATGAGCGATTACAAGATGAATTACC
TTACAATGCAATTACCCAGCAGCTAGCTGAAATTATGGATTGCAATGCTTGTATTGTAAACAGCAAGGGGCGTCTTTTGG
GGTATTTCATGCGCTACAAGACGAACAATGACCGTGTGGAAGCATTTTATCAAACAAAAATCTTCCCAGAAGAGTATGTT
CGCACAGCGAATTTGATGTACGATACAGAAGCTAATCTTCCTGTCAATCATGCTTTATCTATTTTTCCAGTCGAAACCAA
AGATGAATTTCCAGATGGCTTGACGACGATTTCGCCTATTCATGTATCAGGGATTCGCTTAGGAACATTGATTGTTTGGC
GAAATGATAAAGAATTTGATGATGATGACTTGATCTTGGTTGAAATTGCAAGTACAGTAGTTGGGATTCAGCTACTCAAC
TTCCAACGAGAAGAAGATGAAAAAAATATTCGCCGCAGAACAGCTGTAACCATGGCTGTGAATACGCTATCTTATTCAGA
ATTACGAGCTGTTTCAGCTATTTTAGGTGAACTAAATGGTAATGAAGGACAGTTGACAGCATCGGTCATTGCAGATCGTA
TTGGGATTACTCGCTCAGTGATTGTCAATGCTTTGCGTAAACTAGAGAGTGCAGGCATTATTGAGAGTCGTTCTTTAGGA
ATGAAAGGAACCTACCTTAAAGTCCTTATTCCCGATGTCTTTGAAGAGATTAAAAGGAGAGACTACTGA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

61.832

100

0.618
  codY Bacillus subtilis subsp. subtilis str. 168

50.407

93.893

0.473

Multiple sequence alignment