Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KYE71_RS00510 Genome accession   NZ_CP079231
Coordinates   137679..139511 (+) Length   610 a.a.
NCBI ID   WP_034880196.1    Uniprot ID   -
Organism   Bifidobacterium pseudocatenulatum strain YIT12820     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 132679..144511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYE71_RS00490 (KYE71_00490) thiS 132989..133183 (-) 195 WP_003833700.1 sulfur carrier protein ThiS -
  KYE71_RS00495 (KYE71_00495) - 133739..134791 (+) 1053 WP_171842634.1 aldo/keto reductase -
  KYE71_RS00500 (KYE71_00500) - 134910..135404 (+) 495 WP_022244787.1 MarR family winged helix-turn-helix transcriptional regulator -
  KYE71_RS00505 (KYE71_00505) - 135710..137677 (+) 1968 WP_081291320.1 ABC transporter ATP-binding protein -
  KYE71_RS00510 (KYE71_00510) rcrQ 137679..139511 (+) 1833 WP_034880196.1 ABC transporter ATP-binding protein Regulator
  KYE71_RS00515 (KYE71_00515) - 139597..140565 (-) 969 WP_065434927.1 FAD:protein FMN transferase -
  KYE71_RS00520 (KYE71_00520) - 140702..142078 (+) 1377 WP_034880345.1 MFS transporter -
  KYE71_RS00525 (KYE71_00525) - 142471..144234 (+) 1764 WP_065434926.1 FTR1 family protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 66665.20 Da        Isoelectric Point: 5.7914

>NTDB_id=588319 KYE71_RS00510 WP_034880196.1 137679..139511(+) (rcrQ) [Bifidobacterium pseudocatenulatum strain YIT12820]
MPGGPMGRGRGAVEKPQDFGGVMKKLVHFCRHYIPAIIVALVLGAIGTVCQIVGPDKLKDMTNEIAKGLPALVNGKPVLG
AIDMDAVTHIAWLLVALYVGYAVLCYVQSWMMANVTQRTAQELREAISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQ
TLGQSVGSLITSVTLFVGALIMMFYNNVIMTVCAIASSLVGLLIMGAIMKVSQKYFSRQQIALGDVNGHVEEMYAGHTVV
KAYCGEADSIRAFEKYNGDLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQP
LSQFAQAFQNLQRCAAASERVFSFLEEPEMADESDKQALLGVNGKPVRGDVEFSHVKFGYDPSKTIINDFSASVKSGQKV
AIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPDVTDKQIEDA
CKAVGLHHYIMSLPNGYDTVLDDKATLSQGQKQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFV
IAHRLSTIRDADMILVMNHGDIVESGTHEELLAKGGFYADIYNSQFALTD

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=588319 KYE71_RS00510 WP_034880196.1 137679..139511(+) (rcrQ) [Bifidobacterium pseudocatenulatum strain YIT12820]
ATGCCAGGAGGACCTATGGGACGCGGCCGCGGAGCCGTTGAAAAACCGCAGGATTTCGGTGGTGTGATGAAGAAACTGGT
GCATTTCTGCCGCCACTACATTCCCGCCATCATTGTGGCGCTCGTATTGGGCGCGATCGGCACGGTATGCCAGATCGTCG
GTCCGGACAAGCTCAAGGACATGACCAACGAGATCGCCAAAGGCCTGCCTGCGCTAGTCAATGGCAAGCCGGTGCTCGGT
GCGATCGACATGGACGCGGTCACGCACATCGCATGGCTGCTGGTGGCGCTGTATGTGGGGTACGCGGTGCTGTGCTACGT
GCAAAGCTGGATGATGGCGAACGTCACGCAGCGCACCGCACAGGAGCTGCGCGAAGCCATCAGCGTGAAGATCAACAAGC
TGCCGCTCAAGTATTTCGACAAGGTCAGCTACGGCGATGTGCTCAGCCGCATCACCAACGATGTGGACGCCATCGGCCAG
ACGCTCGGCCAGTCGGTCGGCTCGCTGATCACGTCGGTCACGCTGTTCGTGGGCGCGCTCATCATGATGTTCTACAACAA
TGTGATTATGACGGTGTGCGCCATCGCTTCCAGCCTGGTTGGCCTGCTCATCATGGGCGCAATCATGAAGGTTTCGCAGA
AGTACTTCTCCCGTCAGCAGATCGCATTGGGCGATGTCAACGGTCACGTCGAAGAGATGTACGCCGGCCACACCGTGGTC
AAGGCGTATTGCGGCGAGGCTGATTCGATTCGCGCGTTCGAAAAGTACAACGGCGATTTGTACGATTCGGGATGGAAGAG
CCAGTTCCTTTCCGGCCTGATGATGCCGTTGATGAATTTCGTCGGCAATTTCGGCTACGTGGTTGTGTGCGTGGTTGGCG
CTGTGCTTGCGATGGATGGCAAGATCGAGTTTGGTGTGATCGTTGCGTTCATGATGTACATTCGACTGTTCACCCAGCCG
CTTTCCCAGTTCGCGCAGGCATTCCAGAACCTGCAGCGTTGCGCGGCCGCTTCCGAGCGCGTGTTCAGCTTCCTTGAAGA
GCCGGAGATGGCCGACGAATCCGACAAGCAGGCGCTGCTCGGCGTGAACGGCAAACCGGTGCGCGGTGACGTTGAGTTCA
GTCATGTGAAGTTCGGTTACGATCCGAGCAAGACGATCATCAACGATTTCTCCGCTTCGGTGAAGTCCGGTCAGAAGGTT
GCGATTGTTGGTCCGACCGGTGCCGGCAAGACCACGATGGTGAATCTGCTGATGCGTTTCTATGAGATTTCGGGCGGTTC
GATTGCGATTGATGGTGTGGATACGAAGTCCGTGCCACGCTGGAACGTGCATGACCAGTTCTCCATGGTATTGCAGGATA
CGTGGGTGTTCCGTGGAACAGTGCGTGAAAACATCGCGTATTCGAAGCCGGACGTCACCGACAAGCAGATCGAGGACGCA
TGCAAGGCCGTGGGGCTGCACCACTACATCATGTCGCTGCCGAATGGCTATGACACAGTGCTTGACGACAAGGCCACGCT
TTCGCAGGGTCAGAAGCAGTTGCTCACCATTGCGCGAGCCATGGTTGAGGATGCGCCGATCCTGATTCTCGACGAGGCCA
CCTCTTCGGTCGATACGCGTACGGAAGAGCTGATTCAGAAGGCCATGGACGCGCTGACCGTGGACCGTACGTCGTTCGTG
ATCGCGCATCGCCTGTCCACCATCCGCGATGCGGACATGATTTTGGTCATGAACCATGGCGACATCGTGGAAAGCGGTAC
GCATGAGGAGCTGCTCGCCAAAGGCGGTTTCTACGCCGACATTTACAACAGCCAGTTCGCCCTCACCGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(38-321)

ABC transporter (ABC_tran)

(388-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.333

95.902

0.511