Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KYG33_RS10625 Genome accession   NZ_CP079219
Coordinates   2349453..2350106 (+) Length   217 a.a.
NCBI ID   WP_219073200.1    Uniprot ID   -
Organism   Chryseobacterium sp. D764     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2344453..2355106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYG33_RS10615 (KYG33_10610) aceB 2345791..2347365 (-) 1575 WP_219073199.1 malate synthase A -
  KYG33_RS10620 (KYG33_10615) - 2347492..2348970 (+) 1479 WP_077419117.1 helix-turn-helix domain-containing protein -
  KYG33_RS10625 (KYG33_10620) comF 2349453..2350106 (+) 654 WP_219073200.1 ComF family protein Machinery gene
  KYG33_RS10630 (KYG33_10625) - 2350227..2350913 (+) 687 WP_180564505.1 alpha/beta fold hydrolase -
  KYG33_RS10635 (KYG33_10630) upp 2350915..2351565 (-) 651 WP_180564506.1 uracil phosphoribosyltransferase -
  KYG33_RS10640 (KYG33_10635) der 2351728..2353038 (-) 1311 WP_077419113.1 ribosome biogenesis GTPase Der -
  KYG33_RS10650 (KYG33_10645) - 2353617..2353835 (+) 219 WP_219073201.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25114.00 Da        Isoelectric Point: 7.2227

>NTDB_id=588291 KYG33_RS10625 WP_219073200.1 2349453..2350106(+) (comF) [Chryseobacterium sp. D764]
MIVDLLFPNRCIHCNKIIDSELLVCDLCFSQLHFTHYSYFENNPIKEKCSLFFPIENTFALLQFEEESLSRQIIHELKYK
GREKAGKILADWTTERLDFKNEKPDLLVSVPLHPKKMKERGYNQLHLFTETLAAFYDIPFDHQLIKRNHYSKAQALKDKK
HRLEAVNTFSITQSVSGKHILLIDDVFTTGNTVSSVAWEILNAGNNKVSVLVIAMDV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=588291 KYG33_RS10625 WP_219073200.1 2349453..2350106(+) (comF) [Chryseobacterium sp. D764]
ATGATAGTAGATTTATTGTTTCCGAACCGTTGTATCCACTGCAACAAAATCATTGATTCTGAACTTTTGGTATGTGATCT
TTGTTTTAGCCAGCTCCATTTTACCCACTATTCCTATTTTGAAAATAATCCGATTAAGGAGAAATGCAGTTTGTTTTTTC
CTATTGAAAACACCTTTGCTTTACTGCAATTTGAAGAGGAGAGCTTAAGTCGTCAGATTATCCATGAGCTGAAATACAAA
GGCCGGGAAAAAGCTGGAAAGATCCTTGCAGACTGGACCACAGAACGCCTGGACTTTAAGAACGAGAAACCTGATCTTTT
GGTAAGTGTACCGCTTCATCCAAAAAAAATGAAGGAACGTGGATACAACCAGCTTCATTTATTCACAGAAACCTTAGCGG
CATTTTATGACATTCCCTTTGATCATCAACTAATCAAAAGAAATCATTATTCAAAGGCACAGGCTTTAAAGGATAAGAAA
CACAGATTGGAAGCTGTCAACACATTCTCTATCACACAATCGGTTTCAGGAAAACATATTCTTCTGATTGATGATGTTTT
TACCACAGGGAATACCGTTTCATCGGTTGCATGGGAAATTTTAAATGCCGGAAATAACAAAGTGAGTGTATTAGTAATAG
CAATGGATGTTTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

49.537

99.539

0.493