Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KYF39_RS04110 Genome accession   NZ_CP079205
Coordinates   887336..887989 (-) Length   217 a.a.
NCBI ID   WP_004918078.1    Uniprot ID   A0AAP6LJM8
Organism   Riemerella anatipestifer RA-YM     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 882336..892989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYF39_RS04095 (KYF39_04095) - 883156..884238 (-) 1083 WP_004918073.1 serine hydrolase -
  KYF39_RS04100 (KYF39_04100) - 884349..886004 (-) 1656 WP_004918074.1 ribonucleoside-diphosphate reductase subunit alpha -
  KYF39_RS04105 (KYF39_04105) - 886052..887026 (-) 975 WP_004918076.1 ribonucleotide-diphosphate reductase subunit beta -
  KYF39_RS04110 (KYF39_04110) comF 887336..887989 (-) 654 WP_004918078.1 ComF family protein Machinery gene
  KYF39_RS04120 (KYF39_04120) - 888211..888762 (-) 552 WP_004918080.1 hypothetical protein -
  KYF39_RS04125 (KYF39_04125) - 888817..889467 (-) 651 WP_004918082.1 HD domain-containing protein -
  KYF39_RS04130 (KYF39_04130) gdhA 889599..890957 (-) 1359 WP_014938006.1 NADP-specific glutamate dehydrogenase -
  KYF39_RS04135 (KYF39_04135) dprA 891141..892244 (-) 1104 WP_004918085.1 DNA-processing protein DprA Machinery gene
  KYF39_RS04140 (KYF39_04140) - 892247..892624 (-) 378 WP_004918086.1 group III truncated hemoglobin -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25339.46 Da        Isoelectric Point: 9.4150

>NTDB_id=588228 KYF39_RS04110 WP_004918078.1 887336..887989(-) (comF) [Riemerella anatipestifer RA-YM]
MFLDFFLPNRCLKCNLIISSDEIVCWACKSHINFTYNDFGGKGDFYQKVVLKFPVNKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSHQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQRIPYSHYLLKRNFYSKPQALKQKL
DREKMQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=588228 KYF39_RS04110 WP_004918078.1 887336..887989(-) (comF) [Riemerella anatipestifer RA-YM]
ATGTTTTTAGATTTTTTTCTGCCCAATAGATGCCTAAAGTGTAATCTCATTATTTCCTCTGATGAAATCGTTTGCTGGGC
GTGTAAGTCTCATATCAATTTTACCTACAATGATTTTGGAGGAAAAGGGGATTTTTATCAAAAAGTTGTTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAGTACGAGAAAAAAGAACTTTCTCAAGATATTATACACGCCTTAAAGTACCAT
TCTATGGAGCGTGTGGGTAAGGTGTTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTCATCAAGGGATAGATATATT
AACTAATATTCCACTTCATCCTAAAAAACAAAGAGAGAGAGGGTATAATCAGTTGCATTTATTTACAAAAACATTATCTC
AGTTGCAGAGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGATGCAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(163-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

100

100

1