Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SA27298_RS00945 Genome accession   NZ_AP018548
Coordinates   173543..175897 (-) Length   784 a.a.
NCBI ID   WP_003032958.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CCUG 27928     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 168543..180897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS00925 (SA27298_0181) - 168545..168994 (-) 450 WP_003027068.1 threonine/serine exporter family protein -
  SA27298_RS00930 (SA27298_0182) - 168998..169774 (-) 777 WP_003033010.1 threonine/serine exporter family protein -
  SA27298_RS00935 (SA27298_0183) pflB 169875..172190 (-) 2316 WP_003032996.1 formate C-acetyltransferase -
  SA27298_RS00940 (SA27298_0185) dinB 172439..173506 (+) 1068 WP_003032972.1 DNA polymerase IV -
  SA27298_RS00945 (SA27298_0186) recD/recD2/recDB 173543..175897 (-) 2355 WP_003032958.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SA27298_RS00950 (SA27298_0188) lepB 176279..176893 (-) 615 WP_003033014.1 signal peptidase I -
  SA27298_RS00955 (SA27298_0189) rnhC 176897..177787 (-) 891 WP_003032992.1 ribonuclease HIII -
  SA27298_RS00960 (SA27298_0190) - 177873..178178 (+) 306 WP_003026418.1 hypothetical protein -
  SA27298_RS00965 (SA27298_0191) - 178175..178723 (+) 549 WP_003033009.1 CvpA family protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88295.45 Da        Isoelectric Point: 4.6522

>NTDB_id=58768 SA27298_RS00945 WP_003032958.1 173543..175897(-) (recD/recD2/recDB) [Streptococcus anginosus strain CCUG 27928]
MEFYFSGTIERIIFENPSSFFRILLLDIDDTDADFDDFEIIVTGTMADIMEGEDYTFWGNLVQHPKYGEQLKITRYERAK
PTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGDNAIDKVLAEPEKLKDIAGLSAKNREAFLTKLRQNYGTERILAKLSEYG
IPNKLAFQIQDFYKEETLEIVEHYPYQLVEDIQGIGFKIADQLAQSLGIESTAPERFRAGLLHTLLIQSMEKGDTYLEAK
ELLEGTIELLESSRQIELDSSSVADELAHLIEEDKVQNVDTKIFENSLFFAEEGIRSSLLRILEKGKQNKFEPKKIEAAI
TQIEIEFAISYDVIQKQAICDAINHKIFILTGGPGTGKTTVINGIIAVYALLNGLDLRKSHDLPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNTKLLIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQSKDSTIVTLASQIQKGILPTDFIEKKADRSYFEARSEHIPQMIERIVEAAIRSGIPAQDVQVL
APMYRGQAGIDHINQLMQNLINPAEKEQLVFEATDCQYRQGDKVIHLVNDAESNVFNGDLGYITDLLPAKYTDSKQDELT
INFDGNEIVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITSSSHRMLQRNLIYTAITRAKSKLILLGEKSAFDFAVKN
TGTARNTYLIQRFSDLINDEKVIHTSVDNLETTVENYVLSEENFLKINPMIGITDEDIQSVFGE

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=58768 SA27298_RS00945 WP_003032958.1 173543..175897(-) (recD/recD2/recDB) [Streptococcus anginosus strain CCUG 27928]
ATGGAATTTTACTTTTCAGGCACCATTGAACGCATTATTTTTGAAAATCCCAGCAGTTTCTTTCGGATTCTGCTGTTAGA
TATTGACGACACCGATGCAGATTTTGATGATTTTGAGATTATTGTCACGGGCACCATGGCGGATATTATGGAGGGCGAAG
ACTACACTTTTTGGGGAAATCTCGTGCAACACCCTAAATATGGTGAACAACTCAAAATAACACGCTATGAGCGTGCAAAG
CCAACCAGCAAAGGCTTAGTCAAATATTTTTCAAGCGACCATTTTAAAGGGATTGGTGTAAAAACAGCGCAAAAAATCGT
GGATCTCTATGGCGACAACGCGATTGATAAAGTCTTAGCAGAGCCAGAAAAATTAAAGGATATTGCAGGTCTTTCTGCTA
AAAACCGTGAAGCCTTTCTCACAAAACTAAGACAAAATTATGGCACCGAGAGAATCCTTGCCAAGCTATCTGAATACGGT
ATCCCGAACAAGCTTGCCTTTCAGATTCAAGATTTTTACAAAGAAGAGACTCTCGAAATTGTCGAACACTATCCTTATCA
GTTAGTGGAAGATATTCAAGGAATAGGATTTAAAATTGCCGACCAACTGGCGCAAAGCTTAGGAATTGAAAGTACCGCTC
CAGAGCGCTTCCGTGCAGGATTACTCCACACACTTCTAATCCAGTCCATGGAAAAAGGCGACACCTATCTTGAAGCTAAG
GAATTGCTAGAGGGCACGATTGAGCTCCTCGAAAGTTCTCGTCAGATTGAGTTAGACTCAAGTTCTGTTGCGGATGAGCT
GGCACATTTGATTGAAGAAGATAAAGTTCAAAATGTTGATACAAAGATTTTTGAAAACAGTCTCTTTTTTGCCGAAGAAG
GGATTCGCAGCAGTCTCCTACGCATTTTAGAAAAAGGGAAGCAAAACAAATTTGAACCGAAAAAAATCGAAGCTGCTATT
ACCCAAATCGAAATTGAGTTTGCCATTTCCTATGATGTGATTCAAAAACAAGCGATTTGTGACGCTATCAATCACAAAAT
TTTTATCCTAACGGGTGGTCCCGGAACGGGAAAAACGACCGTCATCAATGGAATCATTGCTGTTTACGCTCTGCTGAATG
GGTTGGATTTGCGTAAATCTCACGATTTGCCTATCCTTCTAGCAGCTCCGACTGGGCGTGCTGCCAGACGCATGAATGAA
TTAACAGGGCTTCCAAGCGCTACGATTCATCGGCATTTAGGCATGACAGGAGACGATGACACTAGCCATTTAGATGATTA
TTTGGACGCAGACTTTATTATTGTCGACGAATTTTCAATGGTAGATACTTGGTTAGCCAATCAACTCCTCAGCAACATTT
CATCAAACACCAAACTCCTAATTGTCGGAGATGCTGATCAGCTGCCTTCTGTCAGCCCCGGACAAGTGCTGGCAGATTTA
CTGAAAATCCCTCTTCTTCCACAGACCAAATTAGAAAAAATTTATCGACAAAGCAAAGATTCCACTATCGTTACCTTAGC
CAGTCAGATTCAAAAAGGCATCCTGCCAACTGATTTTATAGAAAAAAAGGCTGACCGTTCTTATTTTGAAGCGCGTAGTG
AACATATTCCGCAGATGATTGAACGTATTGTAGAAGCTGCTATCCGCAGTGGCATTCCAGCTCAAGATGTGCAGGTACTT
GCGCCTATGTACCGCGGACAGGCTGGGATTGACCACATCAATCAACTCATGCAAAATCTAATCAACCCTGCCGAAAAAGA
ACAACTCGTCTTTGAAGCAACGGATTGCCAATACCGACAAGGCGACAAGGTGATTCATCTGGTCAATGATGCGGAAAGCA
ATGTGTTCAACGGTGACTTGGGTTATATCACCGATTTGCTGCCAGCAAAATATACGGACTCTAAACAGGACGAATTGACT
ATCAACTTTGACGGCAATGAGATTGTTTATCAACGCAGTGAATGGTATAAAATTCGTCTGGCATACGCTATGAGTATCCA
CAAATCTCAGGGTAGTGAATTTCCTGTAGTCATTTTACCGATTACATCCAGCAGCCACCGTATGCTGCAACGCAATCTTA
TCTATACTGCTATCACCCGTGCCAAGAGCAAATTGATTCTTCTTGGGGAAAAGTCTGCCTTTGACTTTGCTGTCAAAAAC
ACTGGCACAGCTCGCAATACCTATCTAATCCAACGCTTTTCAGACCTGATCAATGATGAAAAAGTTATACACACTTCTGT
GGATAATTTGGAAACAACTGTGGAAAACTATGTCTTGTCTGAGGAAAATTTCTTGAAAATTAACCCCATGATTGGAATAA
CGGATGAAGATATTCAAAGTGTTTTTGGAGAATGA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(333-528)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.499

95.281

0.395

Multiple sequence alignment