Detailed information NTG0058768

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: LBFF_RS02720
• Genome accession: NC_021235
• Coordinates: 581348..582409 (+)
• Length: 353 a.a.
• NCBI ID: WP_024500762.1
• Uniprot ID: A0A806T290
• Organism: Limosilactobacillus fermentum F-6
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 576348..587409

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LBFF_RS02700 (LBFF_0523)	yfmH	576931..578232 (+)	1302	WP_015638708.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
LBFF_RS02705 (LBFF_0524)	-	578329..579333 (+)	1005	WP_003686010.1	RodZ domain-containing protein	-
LBFF_RS02710 (LBFF_0525)	pgsA	579349..579933 (+)	585	WP_003682805.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
LBFF_RS02715 (LBFF_0526)	-	580010..581254 (+)	1245	WP_003682806.1	competence/damage-inducible protein A	-
LBFF_RS02720 (LBFF_0527)	recA	581348..582409 (+)	1062	WP_024500762.1	recombinase RecA	Machinery gene
LBFF_RS02725 (LBFF_0528)	rny	582804..584363 (+)	1560	WP_012390969.1	ribonuclease Y	-
LBFF_RS02730 (LBFF_0529)	mutS	584457..587099 (+)	2643	WP_003686021.1	DNA mismatch repair protein MutS	-

Sequence

Protein

• Length: 353 a.a.
• Molecular weight: 38111.22 Da
• Isoelectric Point: 4.9958

>NTDB_id=58768 LBFF_RS02720 WP_024500762.1 581348..582409(+) (recA) [Limosilactobacillus fermentum F-6]
MADQRKAALDNALRKIEKNFGKGSIMRMGDAADTKIATISSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVA
EVQRRGGTAAYIDAENALDPQYATALGVQINDLLLSQPDTGEQGLEIADALIASGAVDIVVVDSVAALVPRAEIEGEMGD
THVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRMEIRRGEQLKNGTDVIGNR
AKIKVVKNKVAPPFRKAEVDIMYGEGISKTGELLDMAVEKDLVNKSGAWYSYGNERIGQGRENAKQWFADHEDAMNELMN
KVRVAYGMEPDEAPAAKEGEPQQETIEEASSDK

Nucleotide

• Length: 1062 bp

>NTDB_id=58768 LBFF_RS02720 WP_024500762.1 581348..582409(+) (recA) [Limosilactobacillus fermentum F-6]
TTGGCAGATCAACGAAAAGCAGCCTTAGATAACGCCCTGCGTAAGATTGAAAAGAACTTTGGGAAGGGTTCGATCATGCG
GATGGGTGACGCCGCCGACACCAAGATTGCAACCATTTCCAGTGGCTCCTTAGCCATTGACGAAGCCCTCGGTGTAGGGG
GGTACCCACGGGGCCGAATCATTGAAATGTACGGTCCGGAAAGTTCCGGGAAGACGACCGTCGCTCTCCACGCCGTCGCT
GAAGTGCAACGCCGTGGGGGGACGGCCGCCTACATCGACGCCGAAAACGCCCTCGATCCCCAGTACGCTACCGCCCTGGG
GGTTCAAATTAACGACTTGCTCTTGTCCCAACCAGACACCGGTGAACAGGGGTTGGAAATTGCCGACGCCCTGATCGCTT
CGGGAGCCGTCGACATCGTGGTGGTTGACTCCGTGGCCGCCCTGGTTCCCCGGGCCGAAATCGAAGGGGAAATGGGGGAC
ACCCACGTGGGGTTACAGGCCCGCTTGATGTCCCAAGCCCTGCGGAAGCTTTCCGGGGAAATCAACAAGACCAAGACGAT
CGCCATCTTCATCAACCAAATCCGGGAAAAGGTGGGGGTGATGTTTGGGAACCCGGAAACCACCCCTGGTGGTCGGGCCC
TGAAGTTCTACTCAACCATTCGGATGGAAATCCGGCGCGGTGAACAACTGAAGAACGGGACCGATGTGATCGGGAACCGG
GCCAAGATTAAGGTCGTGAAGAACAAGGTGGCACCGCCGTTCCGCAAGGCCGAAGTAGACATCATGTATGGGGAAGGGAT
CTCCAAGACGGGGGAACTGCTCGATATGGCCGTCGAAAAGGACCTGGTCAACAAGTCCGGGGCCTGGTATTCTTATGGCA
ATGAACGGATTGGCCAAGGGCGTGAAAACGCCAAGCAGTGGTTTGCGGACCACGAAGACGCCATGAACGAGCTGATGAAC
AAGGTGCGGGTGGCCTACGGGATGGAACCGGACGAAGCGCCGGCCGCCAAGGAAGGCGAACCGCAACAAGAAACGATTGA
AGAAGCGTCGAGTGACAAATAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (8-268)

3D structure

• AlphaFold DB: A0A806T290

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Latilactobacillus sakei subsp. sakei 23K	80.882	96.317	0.779
recA	Bacillus subtilis subsp. subtilis str. 168	74.772	93.201	0.697
recA	Streptococcus mitis SK321	66.667	97.734	0.652
recA	Streptococcus mutans UA159	64.426	100	0.652
recA	Streptococcus pyogenes NZ131	68.278	93.768	0.64
recA	Streptococcus mitis NCTC 12261	68.389	93.201	0.637
recA	Streptococcus pneumoniae Rx1	68.085	93.201	0.635
recA	Streptococcus pneumoniae D39	68.085	93.201	0.635
recA	Streptococcus pneumoniae R6	68.085	93.201	0.635
recA	Streptococcus pneumoniae TIGR4	68.085	93.201	0.635
recA	Lactococcus lactis subsp. cremoris KW2	66.566	94.051	0.626
recA	Neisseria gonorrhoeae strain FA1090	60.909	93.484	0.569
recA	Neisseria gonorrhoeae MS11	60.909	93.484	0.569
recA	Neisseria gonorrhoeae MS11	60.909	93.484	0.569
recA	Ralstonia pseudosolanacearum GMI1000	63.492	89.235	0.567
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	59.939	92.635	0.555
recA	Glaesserella parasuis strain SC1401	55.114	99.717	0.55
recA	Helicobacter pylori 26695	57.27	95.467	0.547
recA	Helicobacter pylori strain NCTC11637	57.27	95.467	0.547
recA	Pseudomonas stutzeri DSM 10701	59.133	91.501	0.541
recA	Vibrio cholerae strain A1552	58.824	91.501	0.538
recA	Vibrio cholerae O1 biovar El Tor strain E7946	58.824	91.501	0.538
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	57.273	93.484	0.535
recA	Acinetobacter baumannii D1279779	57.895	91.501	0.53
recA	Acinetobacter baylyi ADP1	57.895	91.501	0.53
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	56.923	92.068	0.524