Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   K751_RS01460 Genome accession   NC_021218
Coordinates   296004..296288 (+) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori UM066     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 291004..301288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K751_RS01440 (K751_08145) - 291724..293151 (+) 1428 WP_000654586.1 amino acid permease -
  K751_RS01445 (K751_08150) rocF 293164..294132 (+) 969 WP_015643438.1 arginase -
  K751_RS01450 (K751_09215) - 294637..295424 (+) 788 Protein_280 integrase -
  K751_RS01455 (K751_08165) - 295528..296007 (+) 480 WP_015643439.1 hypothetical protein -
  K751_RS01460 (K751_08170) comB2 296004..296288 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  K751_RS01465 (K751_08175) comB3 296299..296562 (+) 264 WP_001177712.1 hypothetical protein Machinery gene
  K751_RS01470 (K751_08180) - 296573..296809 (+) 237 WP_001183709.1 hypothetical protein -
  K751_RS01475 (K751_08185) - 296809..299385 (+) 2577 WP_015643440.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  K751_RS08530 (K751_08190) - 299382..299522 (+) 141 WP_015643441.1 hypothetical protein -
  K751_RS01485 (K751_08195) - 299515..300654 (+) 1140 WP_015643442.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=58738 K751_RS01460 WP_000736478.1 296004..296288(+) (comB2) [Helicobacter pylori UM066]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=58738 K751_RS01460 WP_000736478.1 296004..296288(+) (comB2) [Helicobacter pylori UM066]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTGGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGAGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553

Multiple sequence alignment