Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | K750_RS07650 | Genome accession | NC_021217 |
| Coordinates | 1577370..1577633 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584973.1 | Uniprot ID | G2MDJ4 |
| Organism | Helicobacter pylori UM037 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1572370..1582633
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K750_RS07625 (K750_00130) | groES | 1572656..1573012 (-) | 357 | WP_015643481.1 | co-chaperone GroES | - |
| K750_RS07630 (K750_00125) | dnaG | 1573299..1574978 (+) | 1680 | WP_015643480.1 | DNA primase | - |
| K750_RS07635 (K750_00120) | - | 1574975..1576027 (+) | 1053 | WP_015643479.1 | MnmA/TRMU family protein | - |
| K750_RS07640 (K750_00110) | - | 1576116..1576943 (+) | 828 | WP_015643477.1 | DUF5718 family protein | - |
| K750_RS07645 (K750_00105) | comB2 | 1577089..1577370 (+) | 282 | WP_015643476.1 | TrbC/VirB2 family protein | Machinery gene |
| K750_RS07650 (K750_00100) | comB3 | 1577370..1577633 (+) | 264 | WP_000584973.1 | hypothetical protein | Machinery gene |
| K750_RS07655 (K750_00095) | comB4 | 1577635..1579998 (+) | 2364 | WP_015643475.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| K750_RS07660 (K750_00090) | - | 1580300..1581640 (+) | 1341 | WP_015643474.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10034.13 Da Isoelectric Point: 9.5290
>NTDB_id=58725 K750_RS07650 WP_000584973.1 1577370..1577633(+) (comB3) [Helicobacter pylori UM037]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=58725 K750_RS07650 WP_000584973.1 1577370..1577633(+) (comB3) [Helicobacter pylori UM037]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCAGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGTGCCTTTTATCTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCGGATATTATTGTGGCTAAAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCAGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGTGCCTTTTATCTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCGGATATTATTGTGGCTAAAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
98.851 |
100 |
0.989 |