Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   K747_RS02800 Genome accession   NC_021215
Coordinates   568049..568312 (-) Length   87 a.a.
NCBI ID   WP_015645627.1    Uniprot ID   -
Organism   Helicobacter pylori UM032     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 563049..573312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K747_RS02790 (K747_08615) - 564021..565361 (-) 1341 WP_015645625.1 COG3014 family protein -
  K747_RS02795 (K747_08610) comB4 565683..568046 (-) 2364 WP_015645626.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  K747_RS02800 (K747_08605) comB3 568049..568312 (-) 264 WP_015645627.1 hypothetical protein Machinery gene
  K747_RS02805 (K747_08600) comB2 568312..568593 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  K747_RS02810 (K747_08595) - 568739..569566 (-) 828 WP_015645628.1 DUF5718 family protein -
  K747_RS02815 (K747_08585) - 569868..570920 (-) 1053 WP_015645630.1 MnmA/TRMU family protein -
  K747_RS02820 (K747_12515) dnaG 570917..572596 (-) 1680 WP_020849767.1 DNA primase -
  K747_RS02825 (K747_08575) groES 572873..573229 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10134.25 Da        Isoelectric Point: 9.5507

>NTDB_id=58677 K747_RS02800 WP_015645627.1 568049..568312(-) (comB3) [Helicobacter pylori UM032]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSTFLLYLGFLVLFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=58677 K747_RS02800 WP_015645627.1 568049..568312(-) (comB3) [Helicobacter pylori UM032]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCACTTTTTTATTGTATTTAGGGT
TTTTAGTGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

94.253

100

0.943

Multiple sequence alignment