Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M1F49_RS06720 Genome accession   NZ_CP096530
Coordinates   1336162..1336935 (+) Length   257 a.a.
NCBI ID   WP_267417403.1    Uniprot ID   -
Organism   Staphylococcus aureus strain RIVM_M084526     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1331162..1341935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1F49_RS06700 (M1F49_06700) trmFO 1331506..1332813 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  M1F49_RS06705 (M1F49_06705) xerC 1333230..1334126 (+) 897 WP_001015606.1 tyrosine recombinase XerC -
  M1F49_RS06710 (M1F49_06710) hslV 1334123..1334668 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  M1F49_RS06715 (M1F49_06715) hslU 1334734..1336137 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  M1F49_RS06720 (M1F49_06720) codY 1336162..1336935 (+) 774 WP_267417403.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M1F49_RS06725 (M1F49_06725) - 1336986..1337078 (+) 93 WP_001790530.1 hypothetical protein -
  M1F49_RS06730 (M1F49_06730) rpsB 1337277..1338044 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  M1F49_RS06735 (M1F49_06735) - 1338078..1338191 (+) 114 WP_001789890.1 hypothetical protein -
  M1F49_RS06740 (M1F49_06740) tsf 1338226..1339107 (+) 882 WP_000201387.1 translation elongation factor Ts -
  M1F49_RS06745 (M1F49_06745) pyrH 1339244..1339966 (+) 723 WP_000057330.1 UMP kinase -
  M1F49_RS06750 (M1F49_06750) frr 1339985..1340539 (+) 555 WP_001280006.1 ribosome recycling factor -
  M1F49_RS06755 (M1F49_06755) - 1340912..1341682 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28774.18 Da        Isoelectric Point: 6.1649

>NTDB_id=586676 M1F49_RS06720 WP_267417403.1 1336162..1336935(+) (codY) [Staphylococcus aureus strain RIVM_M084526]
MSLLSKTRELNTLLQKRKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=586676 M1F49_RS06720 WP_267417403.1 1336162..1336935(+) (codY) [Staphylococcus aureus strain RIVM_M084526]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACGCAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428