Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   KU891_RS21090 Genome accession   NZ_CP078081
Coordinates   4108249..4110585 (-) Length   778 a.a.
NCBI ID   WP_071678918.1    Uniprot ID   A0AAW5XHZ9
Organism   Bacillus tropicus strain EMB20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4103249..4115585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU891_RS21065 (KU891_20995) - 4105911..4106255 (+) 345 WP_000209437.1 PH domain-containing protein -
  KU891_RS21070 (KU891_21000) - 4106295..4107362 (-) 1068 WP_000793125.1 AI-2E family transporter -
  KU891_RS21075 (KU891_21005) - 4107539..4107751 (+) 213 WP_000242551.1 hypothetical protein -
  KU891_RS21080 (KU891_21010) - 4107786..4107914 (-) 129 WP_001053553.1 YrzQ family protein -
  KU891_RS21085 (KU891_21015) - 4107933..4108121 (-) 189 WP_000469281.1 hypothetical protein -
  KU891_RS21090 (KU891_21020) recD2 4108249..4110585 (-) 2337 WP_071678918.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KU891_RS21095 (KU891_21025) - 4110682..4111341 (-) 660 WP_000066393.1 tetratricopeptide repeat protein -
  KU891_RS21100 (KU891_21030) mnmA 4111451..4112566 (-) 1116 WP_139888499.1 tRNA 2-thiouridine(34) synthase MnmA -
  KU891_RS21105 (KU891_21035) - 4112583..4113728 (-) 1146 WP_000439907.1 cysteine desulfurase family protein -
  KU891_RS21110 (KU891_21040) - 4113764..4114180 (-) 417 WP_000704116.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87393.85 Da        Isoelectric Point: 5.2015

>NTDB_id=586614 KU891_RS21090 WP_071678918.1 4108249..4110585(-) (recD2) [Bacillus tropicus strain EMB20]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYMVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGKVTEEDIVGCIETMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=586614 KU891_RS21090 WP_071678918.1 4108249..4110585(-) (recD2) [Bacillus tropicus strain EMB20]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAAAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAATGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCTCGCATGCATGAAGATGAAGTGTTTACGTTGACAGGTCATTTTAAAGACCATCCGAAGTATGGA
AAACAATATATGGTTGAAACGTTTAAGAAAGAATTGCCGCAAACGAAAGCCGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTAGATCATCTCGGAGAACATGCTATTTCTAAAATTATGGATG
ACCCTGAGGCATTAAATGGTGTTGTTAATAAACAAAAGGCTCAGGAGATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGCTTTTTAAATGGCTACGGTTTTGGAACGAAACTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAACCCGTACCAACTTATCGAAGAAGTGGACGGGATTGGTTTTGGAAGAGCGGATGATA
TAGGGCGTGCGTTAGGGATATCTGGTAATCACGACGACCGTGTACGCGCAGGATGTTTTTACACGTTAGAGAATGTCTCA
TTACAACTTGGTCACGTTTATATGAGGAAAGACCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAA
AGTGACTGAGGAAGATATTGTAGGCTGTATTGAAACGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAGCGAGTGT
ATTTAGCAACGTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCCATTCGCAGGCTTATGAATCAAGAAGAAACACCTTCA
TTTCCAGAGGCAGAAGTGTTAAAAACATTAGGTGAAATTGAAGAACAACTGAACGTACAATATGCACCGTTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCGATA
TTATTAACGGCTCCAACAGGAAGGGCAGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACGCCCGAAGGGTCTTTCCAGCGGAACGAAACAGATCCGGTACAAGGGAAATTACTCATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTTTTTAAGTCATTGCCGACTAACATTCAAGTTATCGTTGTAGGCGAT
GAAGATCAATTGCCATCTGTAGGACCTGGACAAGTATTAAAGGATTTATTGAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAGATTTATCGTCAAGCGGAAGGTTCATCAGTAATTCAACTTGCCCATGCGATAAAAAATGGAACGCTCCCACCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGCACAGGAGCTCAAATTGTTGAGGTTGTTAAGAAGGTTTGC
GAAAACGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTATTAGCCCCGATGTATCGTGGACCGGCGGGTATTAA
TGTACTAAACGAAGCATTGCAAGAAGTGTTTAATCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTCTTGCAACTTGTTAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATCGGCGAAATTGTT
TCGGTGTTTTATGCGAAAGAGAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACATATAC
AAAACCAGATTTAAATCAAATTACACATGCCTATTGCTGTTCGATTCATAAATCACAAGGTAGTGAATTTCCGATTGTGA
TTATGCCGATAGTAAAAAGTTATAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCTGCTTTCCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TAGTAGATTGCAGGAATCACAAGGAGAAGTACAGATGGTAACGGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.89

100

0.578